Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00325 ATGGCCTACGATGATCATCTTTGCAACATAGGCCTTCTTCTAGGGTTAGGATTCACTTCTACCCAGCAGGCTGAATCAAAAACTGTTAATCAGATTCCAAAGAATCCTACCAGTGATTACGCAGTCGGAGGTTTCGAGCCATCTTTAACTTTGGGCCTTTCTGGCGAGATGTATAAAATGGGGAGCCGAAAAATTGACGTGAACAAAGGCTGTGATGAGGGTGGTGATTTGAATCGGCAAGCTTCATCGCAAAGCGCCGTGTCTTCTTTCTCCAGCGGTAGGGTGAAGAGAGAGAGAGACCATAGCAGTGAAGAGGTGGAGGTAGAGAAAGTGTCGTCGAGAGTTAGTGATGAAGATGAAGATGGTTCTAATGCCAGAAAGAAACTTAGGCTTACAAAAGACCAGTCCGCCCTCCTTGAAGAAAGCTTCAAACTCAACAGCACTCTTAACCCTAAGCAAAAGCAAGCTTTAGCAAGACAGCTAAATCTCCGACCGAGACAAGTTGAAGTATGGTTTCAAAACAGGAGAGCTAGAACAAAACTCAAGCAAACAGAGATAGATTGCGAATTTCTTAAGAAATGCTGCGAAACACTAACAGATGAAAACAGAAGATTACAGAAAGAGATTCAGGAGCTGGAGGCTCTAAAACTAGCTCAACCCTTTTACTTGCATATGCCAGCGGCAGCTCTCACGCTATGTCCAGCTTGTGAGAGGCTCAACAATGGAGTTTCCAAGACTCCATTTTCCATCTCCTCCAAACCTACCTTTTACAACCCCTTCGCTAATCCTTCTGCTGCTTGTTAG 804 44.65 MAYDDHLCNIGLLLGLGFTSTQQAESKTVNQIPKNPTSDYAVGGFEPSLTLGLSGEMYKMGSRKIDVNKGCDEGGDLNRQASSQSAVSSFSSGRVKRERDHSSEEVEVEKVSSRVSDEDEDGSNARKKLRLTKDQSALLEESFKLNSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEIDCEFLKKCCETLTDENRRLQKEIQELEALKLAQPFYLHMPAAALTLCPACERLNNGVSKTPFSISSKPTFYNPFANPSAAC 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6236831 6237897 - Bma022991.1 Bma06g00325 83827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00325 267 MobiDBLite consensus disorder prediction 93 129 - -
Bma06g00325 267 Pfam Homeobox associated leucine zipper 182 215 IPR003106 GO:0006355|GO:0043565
Bma06g00325 267 ProSiteProfiles 'Homeobox' domain profile. 122 182 IPR001356 GO:0003677
Bma06g00325 267 ProSitePatterns 'Homeobox' domain signature. 157 180 IPR017970 GO:0000981|GO:0006355
Bma06g00325 267 CDD homeodomain 126 183 IPR001356 GO:0003677
Bma06g00325 267 MobiDBLite consensus disorder prediction 71 129 - -
Bma06g00325 267 MobiDBLite consensus disorder prediction 77 92 - -
Bma06g00325 267 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE 7 267 - -
Bma06g00325 267 PANTHER - 7 267 - -
Bma06g00325 267 Pfam Homeodomain 126 180 IPR001356 GO:0003677
Bma06g00325 267 Gene3D - 119 187 - -
Bma06g00325 267 Coils Coil 188 218 - -
Bma06g00325 267 SUPERFAMILY Homeodomain-like 115 183 IPR009057 -
Bma06g00325 267 SMART halz 182 225 IPR003106 GO:0006355|GO:0043565
Bma06g00325 267 SMART HOX_1 124 186 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00325 Bma-Chr6:6236831 Bma10g00168 Bma-Chr10:1446294 1.39E-67 dispersed
Bma01g00478 Bma-Chr1:3922706 Bma06g00325 Bma-Chr6:6236831 6.38E-47 transposed
Bma15g01097 Bma-Chr15:43737466 Bma06g00325 Bma-Chr6:6236831 1.09E-95 wgd
Bma03g01175 Bma-Chr3:17104644 Bma06g00325 Bma-Chr6:6236831 1.25E-153 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57443 PF00046 Homeodomain 2.20E-16 CL0123 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00325 K09338 - tcc:18611354 364.385