Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00334 ATGCTGATGTTTCAGCCTTCGAAGACAGATGGGGTTGTTGGTTTTGACGGTGGTGGAGCTGGGCATGTTCTAGATCTGGACACGGCCGTAGAAGATGGGGCATTGGGCGGCATTGGCGGCGGTGATGGTATCGGAACCGGAGCTGTCGAGAAATTAGATCTGAAGAAGATGATTGAATTTCTAAACTTAACTGAGGTGCCGTCAGTGTTCATCTGCCCCATCTCTCTCGAGCCAATGCAAGACCCAGTAACCCTTTGCACAGGCCAAACCTACGAGAGATCGAACATTCTCAAATGGTTCAATTTGGGGCATTACACCTGCCCTACAACGATGCAGGAATTATGGGATGATTCCATTACTCCAAATACCACACTTTACCATCTAATCTACACTTGGTTTACCCAGAAGTATCTATTGATGAAGAAAAGGTCAGAAGACGTACAAGGAAGAACATCAGAAATTCTCAAAAACCTTAAAAAAGTGAAGGGCCAGGGCAGAGTTCAAGCCCTGAAGGAGCTCCGACAATTCGTGGCAGCTCATGGAACAGTCAAGAAAACAGTGATCGACCAAGGCGGAATTGCTATTATTACATCATTATTAGGTCCTTTTACTTCTCACGCTGTTGGGTCTGAAGCCATTGGGATTCTTGTAAATTTGGAACTCGATGCGGACTCGAAAATGAATCTACTGCAGCCTGCAAAATTTTCGCTGGTAGTAGACATTTTAAACGAAGGTTCAATTGGAACTAAAACCAATTGTACCCTTCTGATCGAGAAGCTGATGGAAGATAAGGATTTCCAGTCAGAAATTGTCTCAAGCCACAGACTTTTAGTTGGACTAATGAGACTGATCAAAGATAAGAGGCACCCAAATGGTGTCTATTCCGGACTCAAACTCCTCAAAAAAATCTGTACTCGTTTGGAAGTGAGGAATTTGGTCGTAAGCATCGGTGTTGTTCGACAATTGGTTGAAATGTTACCTTCTCTTGGCCCTGATAGCTTAGAGCTCGTACTCCTTATATTGGAAAACTTGTCGTCTCTACCTGAAGGAGGATTAGCATTAAAAGAGTGCTCAGAAACGATACCGAACATAGTGAAGCTCATTATGAGAGTCTCGGAGAGCTGTACTCAATACGCGTTGTCAATCCTATCGGCTGTGTGCAAACTTGCCCCTGATGAATGTTCTTCTGTCGCCGTCGATGAAGGTCTGGCAGCTAAGCTCCTCCTTGTAATTCAAAGTGGGTGTGGGCCGGCTTTGAAGCAGCAATCTGCAGAGCTATTGAAGTTTTGTAGTCTAAATTATACAGATGCAACATTCATTTCCAAGTGCAAGCTTTCAAGAACTATACAATGA 1353 44.05 MLMFQPSKTDGVVGFDGGGAGHVLDLDTAVEDGALGGIGGGDGIGTGAVEKLDLKKMIEFLNLTEVPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFNLGHYTCPTTMQELWDDSITPNTTLYHLIYTWFTQKYLLMKKRSEDVQGRTSEILKNLKKVKGQGRVQALKELRQFVAAHGTVKKTVIDQGGIAIITSLLGPFTSHAVGSEAIGILVNLELDADSKMNLLQPAKFSLVVDILNEGSIGTKTNCTLLIEKLMEDKDFQSEIVSSHRLLVGLMRLIKDKRHPNGVYSGLKLLKKICTRLEVRNLVVSIGVVRQLVEMLPSLGPDSLELVLLILENLSSLPEGGLALKECSETIPNIVKLIMRVSESCTQYALSILSAVCKLAPDECSSVAVDEGLAAKLLLVIQSGCGPALKQQSAELLKFCSLNYTDATFISKCKLSRTIQ 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7154614 7358504 - Bma031279 Bma06g00334 83836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00334 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 138 IPR013083 -
Bma06g00334 450 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 39 449 - -
Bma06g00334 450 Pfam U-box domain 66 136 IPR003613 GO:0004842|GO:0016567
Bma06g00334 450 SUPERFAMILY ARM repeat 165 434 IPR016024 -
Bma06g00334 450 SMART Ubox_2 69 132 IPR003613 GO:0004842|GO:0016567
Bma06g00334 450 Gene3D - 139 446 IPR011989 -
Bma06g00334 450 SUPERFAMILY RING/U-box 63 136 - -
Bma06g00334 450 PANTHER WDSAM1 PROTEIN 39 449 IPR045185 GO:0061630
Bma06g00334 450 ProSiteProfiles U-box domain profile. 65 139 IPR003613 GO:0004842|GO:0016567
Bma06g00334 450 CDD RING-Ubox_PUB 70 112 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01155 Bma-Chr3:15818390 Bma06g00334 Bma-Chr6:7154614 1.32E-31 dispersed
Bma05g00028 Bma-Chr5:1918102 Bma06g00334 Bma-Chr6:7154614 0 dispersed
Bma06g00334 Bma-Chr6:7154614 Bma05g00512 Bma-Chr5:24684940 1.32E-39 dispersed
Bma03g01153 Bma-Chr3:15777958 Bma06g00334 Bma-Chr6:7154614 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00334 - - tcc:18611313 671.003