Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00346 ATGGAGAGGTTTCTGGAGGAGAACTTTGGAGGTGTGAAGCCGAAGCACTCATCGGAGGAGGTTTTGCAGAGAGAAAAGTTGAGAATTGCAGTTTTGGTTTCGAAAGCCGCATTTCAATTTATCCAAGGTGTTCATCCTAGTGATTACACTGTGCTAGAAGAGGTTAAAGAGGCAGGTTTTCAAATTTGTGGCGATGAATTGGGATCCATTGTCGAAGGCCATGATCTGAAGAAGCTTAAATTTCATGGTGGGGTTTCTGGTATTGCAGAAAAGCTCTCCACATCGACAACAAACGGGCTTTCCAATGATTCTGCTTTGCTGAGTCGGAGGCAAGAGATCTACGGAGTCAATAGATTCACGGAGAGTGAATCTAGGAGTTTCTTTGTATTCGTATGGGAAGCCCTTCAAGACATGACTCTCATGATCCTAGGAGTTTGCGCATTTTTATCACTGATTGTTGGGATTATCATGGAAGGATGGCCGAAAGGGGCCCACGATGGGCTCGGCATTGTTGCCAGCATCTTGTTGGTTGTGTTCGTCACTGCAACTAGTGATTATCGCCAGTCTTTGCAGTTCAAGGATTTGGACAAGGAGAAAAAGAAGATATCGATCCAAGTTACAAGAGGTGGTTATAGGCAGAAAATGTCAATATACGACCTACTTCCGGGCGATATTGTGCATCTTTCCATAGGAGACCAAGTCCCGGCCGACGGATTATTTATTTCAGGATTCTCTGTGCTAATTGACGAATCCAGTTTGACTGGGGAGAGTGAGCCGGTAATGGTCAGTTCTCAGAGTCCGTTTCTCCTTTCCGGAACCAAGGTTCAAGACGGATCGTGCAAGATGATCGTTACTACTGTCGGCATGAGAACTCAATGGGGTAAATTGATGGCAACCCTTAGTGAGGGTGGAGATGATGAAACTCCATTGCAGGTTAAATTAAATGGAGTGGCAACTATTATTGGAAAAATTGGTCTTTTCTTTGCAGTGGTAACTTTTGCTGTATTGGTTCAAGGGTTGTTTAGCAGTAAAATTCGAGAGGGTACCCACTGGAGCTGGTCCGGAGATGATGCCCTCCAAATGCTTGAATTCTTTGCTGTTGCAGTTACAATTGTTGTCGTGGCTGTACCGGAAGGGCTGCCATTGGCCGTGACCTTGAGCCTTGCCTTTGCCATGAAGAAGATGATGAATGATAAAGCACTGGTTCGACATCTTGCAGCCTGTGAGACAATGGGATCGGCCACAACTATCTGTAGCGACAAGACTGGAACATTAACGACCAATCACATGACTGTTGTCAAATCATGCATTTGTATGAAAGTGGAAAATGCCGAAAAGGCTTCTGTCTTGAGCTCAACTCTCCCTGAATCTGCTAAGAAGTTGCTTCTTCAGTCAATATTCAACAACACTGGAGGAGAAGTGGTGGTGAACAAAGATGGAAAGCGCGAGATTTTGGGAACACCAACCGAGACTGCATTATTAGAATTTGGTTTGTCACTCGGTGGAGATTTTCTGACTGAGAGGCAAGCCTGTGAGCTTCTTAAAGTTGAGCCATTCAACTCTCTGAAAAAGCGAATGGGAGTAATGATCAAACTTCCCGAAGGTGGCATAAGAGCTCATACAAAAGGTGCTTCAGAAATAGTTCTAGCTGCCTGCGAAAAGGTCATAAATTCAAATGGGGAGATCGTGCCTCTCGATGAAGGATCCATTAAGCATCTCAACAGCATTATCGATCAGTTTGCAAATGAAGCTCTCCGAACTCTATGCCTTGCCTACATGGAACTTGAAAATGGAGTCTCTGTAGAGAATCCTATTCCCTCTACTGGGTTTACTTGTATAGGAATTGTGGGTATTAAAGATCCGGTTCGTCCTGGCGTAAAGGAGTCAGTTGCTGTATGTCGTTCATCTGGCATAACTGTGAGAATGGTTACTGGAGATAATATCAATACGGCTAAGGCCATAGCTAGGGAATGTGGGATTCTCACTGACGATGGCTTAGCTATAGAAGGTCCAGATTTTCGAGAGAAGAGCCAGAAGGAGTTGCTTGAAATTATTCCTAAAATTCAGGTGATGGCTAGATCTTCACCTCTAGATAAGCATACACTTGTGAAACACCTGCGAACCACATTTGATGAAGTTGTTGCTGTAACTGGTGATGGGACAAATGATGCTCCAGCCCTCCATGAAGCAGATATTGGACTTGCTATGGGCATTGCTGGGACTGAGGTTGCTAAAGAGAGTGCTGATGTCATTATTCTGGATGATAATTTCTCTACAATCGTCACTGTGGCAAAATGGGGTCGTTCAGTTTACGTAAACATTCAAAAATTTGTACAGTTTCAGCTGACCGTTAATATCGTCGCATTGATAGTTAACTTCTCATCGGCATGTTTAACAGGGACTGCTCCGCTGACAGCCGTTCAGCTTTTGTGGGTGAACATGATTATGGATACTTTAGGTGCACTAGCTCTTGCAACTGAGCCTCCAAATGATGAACTAATGAAGCGAAGCCCAGTGGGAAGAAAAGGAAATTTCATTAGCAATGTTATGTGGAGGAACATCTTAGGACAATCCTTGTATCAGTTTTTGGTTATATGTCTTCTTCAGGCAAAAGGAAAAGCAATATTCGGTCTTGTCGGCCCAGATTCCGAGCTGATCCTCAATACCCTTATCTTCAATTCATTTGTTTTCTGTCAGATTTTCAACGAAGTAAGTTCGCGCGAGATGGAAGAAATAGACGTCTTCAAAGGCATTCTGGATAACTATGTTTTTGTTGGTGTTCTCACTTGCACGGTCTTCTTCCAAATCATAATTATTGAGTTTCTCGGAACGTTTGCCAATACCACACCCCTTACTTTGCCCCAATGGTTTGTTAGTATACTTATCGGGTTTTTGGGGATGCCGATTGCAGCTTGGTTAAAGACGATTCCAGTGTAA 2937 43.68 MERFLEENFGGVKPKHSSEEVLQREKLRIAVLVSKAAFQFIQGVHPSDYTVLEEVKEAGFQICGDELGSIVEGHDLKKLKFHGGVSGIAEKLSTSTTNGLSNDSALLSRRQEIYGVNRFTESESRSFFVFVWEALQDMTLMILGVCAFLSLIVGIIMEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRGGYRQKMSIYDLLPGDIVHLSIGDQVPADGLFISGFSVLIDESSLTGESEPVMVSSQSPFLLSGTKVQDGSCKMIVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVQGLFSSKIREGTHWSWSGDDALQMLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKSCICMKVENAEKASVLSSTLPESAKKLLLQSIFNNTGGEVVVNKDGKREILGTPTETALLEFGLSLGGDFLTERQACELLKVEPFNSLKKRMGVMIKLPEGGIRAHTKGASEIVLAACEKVINSNGEIVPLDEGSIKHLNSIIDQFANEALRTLCLAYMELENGVSVENPIPSTGFTCIGIVGIKDPVRPGVKESVAVCRSSGITVRMVTGDNINTAKAIARECGILTDDGLAIEGPDFREKSQKELLEIIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYVNIQKFVQFQLTVNIVALIVNFSSACLTGTAPLTAVQLLWVNMIMDTLGALALATEPPNDELMKRSPVGRKGNFISNVMWRNILGQSLYQFLVICLLQAKGKAIFGLVGPDSELILNTLIFNSFVFCQIFNEVSSREMEEIDVFKGILDNYVFVGVLTCTVFFQIIIIEFLGTFANTTPLTLPQWFVSILIGFLGMPIAAWLKTIPV 978
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7696879 7702043 + Bma023034.1 Bma06g00346 83848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00346 978 SUPERFAMILY Calcium ATPase, transmembrane domain M 82 977 IPR023298 -
Bma06g00346 978 CDD P-type_ATPase_Ca_PMCA-like 107 850 - -
Bma06g00346 978 Gene3D - 428 621 IPR023299 GO:0000166
Bma06g00346 978 SFLD C1.7: P-type atpase like 400 769 - -
Bma06g00346 978 SMART Cation_ATPase_N_a_2 81 155 IPR004014 -
Bma06g00346 978 ProSitePatterns E1-E2 ATPases phosphorylation site. 420 426 IPR018303 -
Bma06g00346 978 SUPERFAMILY HAD-like 416 822 IPR036412 -
Bma06g00346 978 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 424 626 IPR023299 GO:0000166
Bma06g00346 978 Pfam E1-E2 ATPase 202 396 - -
Bma06g00346 978 Gene3D - 99 301 - -
Bma06g00346 978 Gene3D - 133 972 - -
Bma06g00346 978 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 358 450 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma06g00346 978 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 684 801 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma06g00346 978 PRINTS P-type cation-transporting ATPase superfamily signature 717 736 - -
Bma06g00346 978 PRINTS P-type cation-transporting ATPase superfamily signature 249 263 - -
Bma06g00346 978 PRINTS P-type cation-transporting ATPase superfamily signature 636 646 - -
Bma06g00346 978 PRINTS P-type cation-transporting ATPase superfamily signature 418 432 - -
Bma06g00346 978 PRINTS P-type cation-transporting ATPase superfamily signature 614 625 - -
Bma06g00346 978 PRINTS P-type cation-transporting ATPase superfamily signature 741 753 - -
Bma06g00346 978 SUPERFAMILY Calcium ATPase, transduction domain A 204 298 IPR008250 -
Bma06g00346 978 PRINTS H+-transporting ATPase (proton pump) signature 573 591 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma06g00346 978 PRINTS H+-transporting ATPase (proton pump) signature 717 733 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma06g00346 978 PRINTS H+-transporting ATPase (proton pump) signature 749 774 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma06g00346 978 Pfam haloacid dehalogenase-like hydrolase 614 731 - -
Bma06g00346 978 Gene3D - 415 762 IPR023214 -
Bma06g00346 978 PANTHER CATION TRANSPORTING ATPASE 23 977 - -
Bma06g00346 978 PANTHER CALCIUM-TRANSPORTING ATPASE 1 23 977 - -
Bma06g00346 978 SFLD p-type atpase 400 769 IPR044492 -
Bma06g00346 978 Pfam Cation transporter/ATPase, N-terminus 82 150 IPR004014 -
Bma06g00346 978 Pfam Cation transporting ATPase, C-terminus 802 975 IPR006068 -
Bma06g00346 978 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 77 978 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Bma06g00346 978 Pfam Cation transport ATPase (P-type) 477 555 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00144 Bma-Chr4:1235599 Bma06g00346 Bma-Chr6:7696879 0 dispersed
Bma06g00346 Bma-Chr6:7696879 Bma13g01184 Bma-Chr13:45120643 0 dispersed
Bma08g00675 Bma-Chr8:41787877 Bma06g00346 Bma-Chr6:7696879 1.05E-43 transposed
Bma08g00676 Bma-Chr8:41790995 Bma06g00346 Bma-Chr6:7696879 2.48E-33 transposed
Bma10g00217 Bma-Chr10:1981509 Bma06g00346 Bma-Chr6:7696879 9.00E-26 transposed
Bma15g00618 Bma-Chr15:7843658 Bma06g00346 Bma-Chr6:7696879 0 transposed
Bma01g02247 Bma-Chr1:79646522 Bma06g00346 Bma-Chr6:7696879 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00346 K01537 - csv:101212315 1650.95