Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00347 ATGATGGAATCTCTTTTCGGCTTCAACTCTGCAAATCCTGTCTCAAAAGAGACAGGAAGAAAGACCATTTTCTCTTCCTCCATGGAAAAGGAAACTAGGGTGTTGGACCCAAAGAAATCACAGAACATTGCAATACTACTCAGAGCACTAAACGTGACAAGGGATGAAGTTGCAGAAGCTCTTTCAGATGGTAATCCAGAATGCTTAGGTGCAGAGCTTCTGGAAACTCTAGTAAAAATGGCCCCAACCAAAGAAGAAGAAATAAAACTCCGAGACTATCGAGGCGACATCTCAAAACTCGGGTCTGCCGAACGATTTCTAAAGGCAGTGCTTGATATCCCGTTTGCGTTCAAAAGGGTCGAAGCCATGCTATACAGAGCAAATTTCGACACAGAAGTGAAATATCTGAGGAAGGCATTTCAAACACTAGAGGCAGCTAGCGAAGAACTCAAGACCAGCCGACTTTTCCTTAAACTCCTCGAAGCTGTTCTCAAGACAGGAAATCGAATGAACGTGGGAACGAATCGTGGGGAAGCGACAGCGTTCAAGCTCGAGACTCTCTTAAAACTAGTAGATATAAAAGGCACGGATGGGAAGACGACTTTGCTTCACTTTGTCGTCCAAGAAATAATTCGATCCGAAGGCGAAGGTGGCGAATCGATAAATAGAAATCTTCCAAATAACGGACAGTCGAACACGAAGGAGGACCAATTTAAGAAACAAGGATTGAAGATTGTGGCTGGACTGAGCAGAGACCTCATAAATGTCAAAAAAGCAGCCAATATGGACTCCGATGTCTTAAGCAGCTATGTTTCGAAGCTAGAAATGGGTCTCGAAAAAGTACGATTGGTTTTACGAATCGAGAAGCCGGACGGGGAGGCAAAATTCTTCAACTCCATGAACTTGTTTCTCAAGGAGGCAGAGGGGGAAATAATTTGGATCAAAGCGGAAGAAAAAAAGGCGTTATGGCTTGTAAAAGGAGTCACAGAATACTTCCATGGAAATGCTGCAAAAGAAGAAGCTCGTTCTTTTAGAATATTTATGATAGTGAGAGATTTCTTAAGCATATTGGACCAAGTTTGCAAGGAAGTAGGGAGGATCCATGAAGGAGTAGTGATGGGTTCGGCTCGATCTTTTCGAATATCTTCCACTGTTTCATTGCCAGTCCTCAACCGGTATAACACGAGACGAGATCAAAGTTCCGACGAAGAAAGCTCATCGTCCTGA 1227 43.44 MMESLFGFNSANPVSKETGRKTIFSSSMEKETRVLDPKKSQNIAILLRALNVTRDEVAEALSDGNPECLGAELLETLVKMAPTKEEEIKLRDYRGDISKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDTEVKYLRKAFQTLEAASEELKTSRLFLKLLEAVLKTGNRMNVGTNRGEATAFKLETLLKLVDIKGTDGKTTLLHFVVQEIIRSEGEGGESINRNLPNNGQSNTKEDQFKKQGLKIVAGLSRDLINVKKAANMDSDVLSSYVSKLEMGLEKVRLVLRIEKPDGEAKFFNSMNLFLKEAEGEIIWIKAEEKKALWLVKGVTEYFHGNAAKEEARSFRIFMIVRDFLSILDQVCKEVGRIHEGVVMGSARSFRISSTVSLPVLNRYNTRRDQSSDEESSSS 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7727513 7729161 - Bma023037.1 Bma06g00347 83849

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00347 408 Pfam Formin Homology 2 Domain 1 357 IPR015425 -
Bma06g00347 408 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1 383 IPR015425 -
Bma06g00347 408 PANTHER FORMIN-RELATED 1 408 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Bma06g00347 408 Gene3D Formin, FH2 domain 1 370 IPR042201 -
Bma06g00347 408 PANTHER FORMIN-LIKE PROTEIN 6 1 408 - -
Bma06g00347 408 SUPERFAMILY Formin homology 2 domain (FH2 domain) 30 369 - -
Bma06g00347 408 SMART it6_source 2 372 IPR015425 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00347 - - - qsu:112027015 601.668
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g01142 Bma06g00347 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01144 Bma-Chr3:15432441 Bma06g00347 Bma-Chr6:7727513 0 dispersed
Bma06g00347 Bma-Chr6:7727513 Bma12g00784 Bma-Chr12:35983666 3.84E-113 dispersed
Bma14g01856 Bma-Chr14:39922732 Bma06g00347 Bma-Chr6:7727513 6.02E-133 transposed
Bma03g01142 Bma-Chr3:15288285 Bma06g00347 Bma-Chr6:7727513 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g937 Blo04g01082 Blo16g00351 . . . Bpe15g00301 . . . . Cma02g00531 . Car02g00366 . . . . . . . . . . . Cla01g01710 Cam01g1796 Cec04g1443 Cco04g1507 Clacu01g1821 Cmu01g1699 Cre04g1372 Cone6ag1454 Cone9ag1375 . . Lsi01g00902 . . Cme08g00643 . . Bda11g01477 . Bpe13g00127 . Bma03g01142 Bma06g00347 Sed14g0912 Cmo02g00543 . . . . . . Cpe05g01150 Bhi10g01479 Tan05g1655 Cmetu11g1138 . Hepe08g0488 . . Cla02g00812 Cam02g0859 Cec02g0866 Cco02g0897 Clacu02g0858 Cmu02g0849 Cre02g1167 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma14g01856 . 445 909 FH2 protein (formin) Gene Family AT3G25500 63.5 6.7e-159 558.5
Bma03g01144 . 430 848 FH2 protein (formin) Gene Family AT3G25500 62.2 3.0e-135 479.9
Bma03g01142 BCT 432 862 FH2 protein (formin) Gene Family AT3G25500 60.8 9.7e-134 474.9
Bma06g00347 BCT 1 379 FH2 protein (formin) Gene Family AT3G25500 60.9 7.0e-116 415.6
Bma05g00280 . 481 880 FH2 protein (formin) Gene Family AT3G25500 54.9 3.1e-108 390.2
Bma14g01856 . 479 923 FH2 protein (formin) Gene Family AT2G43800 60.6 1.3e-139 494.2
Bma03g01144 . 434 869 FH2 protein (formin) Gene Family AT2G43800 53.4 6.6e-123 438.7
Bma03g01142 BCT 436 883 FH2 protein (formin) Gene Family AT2G43800 53.0 2.5e-122 436.8
Bma06g00347 BCT 1 400 FH2 protein (formin) Gene Family AT2G43800 53.5 8.9e-104 375.2
Bma12g00784 BCT 12 166 FH2 protein (formin) Gene Family AT4G15200 70.1 3.0e-55 213.0
Bma14g00359 BCT 497 646 FH2 protein (formin) Gene Family AT4G15200 63.6 1.4e-47 187.6
Bma07g01317 BCT 301 448 FH2 protein (formin) Gene Family AT4G15200 58.4 7.8e-43 171.8
Bma14g00359 BCT 270 962 FH2 protein (formin) Gene Family AT5G54650 52.1 6.3e-166 581.6
Bma12g00784 BCT 18 488 FH2 protein (formin) Gene Family AT5G54650 63.9 1.0e-163 574.3
Bma02g01338 BCT 212 687 FH2 protein (formin) Gene Family AT5G54650 61.4 8.5e-155 544.7
Bma07g01317 BCT 311 711 FH2 protein (formin) Gene Family AT5G54650 62.9 8.3e-142 501.5
Bma05g00280 . 479 885 FH2 protein (formin) Gene Family AT5G54650 51.6 1.1e-109 394.8
Bma06g00347 BCT 1 364 FH2 protein (formin) Gene Family AT5G54650 51.2 3.9e-91 333.2
Bma03g01144 . 27 877 FH2 protein (formin) Gene Family AT5G67470 54.7 9.0e-221 763.8
Bma03g01142 BCT 27 891 FH2 protein (formin) Gene Family AT5G67470 54.3 9.9e-220 760.4
Bma06g00347 BCT 2 407 FH2 protein (formin) Gene Family AT5G67470 70.7 4.7e-145 512.3
Bma14g01856 . 443 925 FH2 protein (formin) Gene Family AT5G67470 54.1 1.1e-122 438.0
Bma05g00280 . 484 883 FH2 protein (formin) Gene Family AT5G67470 53.0 6.0e-108 389.0
Bma15g00202 . 291 768 FH2 protein (formin) Gene Family AT1G59910 51.2 4.9e-121 432.6
Bma14g01752 . 395 863 FH2 protein (formin) Gene Family AT1G59910 51.4 4.1e-120 429.5
Bma15g00202 . 131 765 FH2 protein (formin) Gene Family AT1G70140 52.5 3.0e-137 486.1
Bma06g00166 CCT 1 1118 FH2 protein (formin) Gene Family AT1G31810 52.0 1.2e-220 763.8
Bma04g00272 . 579 940 FH2 protein (formin) Gene Family AT1G31810 53.5 1.4e-104 378.3
Bma06g00166 CCT 788 1109 FH2 protein (formin) Gene Family AT5G07650 72.7 3.6e-125 446.0
Bma03g00839 . 1605 1901 FH2 protein (formin) Gene Family AT5G07650 69.4 9.0e-108 388.3
Bma02g00008 . 952 1282 FH2 protein (formin) Gene Family AT5G07650 58.6 3.9e-103 372.9
Bma04g00272 . 662 931 FH2 protein (formin) Gene Family AT5G07650 59.8 2.5e-94 343.6
Bma02g00009 . 866 1181 FH2 protein (formin) Gene Family AT5G07650 55.4 6.3e-93 339.0
Bma06g00166 CCT 699 1102 FH2 protein (formin) Gene Family AT5G07770 63.5 3.9e-132 468.8
Bma03g00839 . 1510 1896 FH2 protein (formin) Gene Family AT5G07770 61.3 1.2e-117 420.6
Bma02g00008 . 893 1300 FH2 protein (formin) Gene Family AT5G07770 54.0 2.5e-110 396.4
Bma04g00272 . 586 924 FH2 protein (formin) Gene Family AT5G07770 55.3 7.2e-102 368.2
Bma02g00009 . 807 1195 FH2 protein (formin) Gene Family AT5G07770 51.0 5.7e-99 358.6
Bma02g00008 . 858 1289 FH2 protein (formin) Gene Family AT3G32400 67.8 1.2e-155 546.6
Bma02g00009 . 772 1188 FH2 protein (formin) Gene Family AT3G32400 63.8 2.4e-143 505.8
Bma06g00166 CCT 700 1109 FH2 protein (formin) Gene Family AT3G32400 62.2 4.6e-134 474.9
Bma03g00839 . 1497 1913 FH2 protein (formin) Gene Family AT3G32400 56.9 7.6e-121 431.0
Bma04g00272 . 586 931 FH2 protein (formin) Gene Family AT3G32400 52.8 4.6e-102 368.6
Bma02g00008 . 1 1289 FH2 protein (formin) Gene Family AT2G25050 52.2 2.7e-310 1061.6
Bma02g00009 . 1 1188 FH2 protein (formin) Gene Family AT2G25050 52.0 6.1e-278 954.1
Bma04g00272 . 586 931 FH2 protein (formin) Gene Family AT2G25050 51.4 5.8e-103 372.9
Bma06g00166 CCT 713 1109 FH2 protein (formin) Gene Family AT5G07780 60.1 1.4e-116 416.8
Bma03g00839 . 1511 1901 FH2 protein (formin) Gene Family AT5G07780 55.8 1.5e-102 370.2
Bma02g00008 . 894 1282 FH2 protein (formin) Gene Family AT5G07780 51.4 1.8e-95 346.7
Bma04g00272 . 587 931 FH2 protein (formin) Gene Family AT5G07780 50.9 3.9e-87 318.9
Bma04g00272 . 559 938 FH2 protein (formin) Gene Family AT5G07740 66.5 6.1e-143 506.1
Bma06g00166 CCT 787 1109 FH2 protein (formin) Gene Family AT5G07760 70.7 1.0e-120 431.4
Bma03g00839 . 1605 1901 FH2 protein (formin) Gene Family AT5G07760 68.5 3.2e-106 383.3
Bma02g00008 . 968 1282 FH2 protein (formin) Gene Family AT5G07760 61.6 6.2e-102 369.0
Bma04g00272 . 661 931 FH2 protein (formin) Gene Family AT5G07760 59.4 2.2e-91 334.0
Bma02g00009 . 882 1181 FH2 protein (formin) Gene Family AT5G07760 57.7 3.2e-90 330.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007546 2 1 2 3 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00347 Bma_Chr06 FPKM 0.0 0.0 0.0 0.971891 0.0 0.0 0.0 1.027402 0.739133 0.93193