Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00353 ATGAGTTGCAACGGGTGCAGAGTTCTCAGGAAAGGGTGCAGCGAGTCTTGTATTCTACGGCCATGTTTGCAATGGATTGAGAGCGCTGAAGCTCAAGCCCACGCCACCATTTTTGTAGCTAAGTTCTTTGGCCGAGCTGGTCTCATGTCCTTTATCTCCGCCGTGCCTGAATCTCAGAGACCCTGTAATTTGTTTTTTCAACCACTTTCACCCACGATCTCGTTGTTTCAGTCGCTGCTATTCGAAGCGTGTGGGCGGACAGTGAATCCTGTCAATGGCGCCGTCGGGCTTCTCTGGACGGGAAACTGGCATATGTGCCAGCAGGCGGTGGAAACTGTGCTTCGAGGAGGGACTTTGCGGGCTTTGCCGGAGGTTTTTGCCGGAGGAGCGTCTGGTTCCCCTTCTGACGAGACGTCCGATATGGATTGTACGGACATATGGAAGCTCCGAGATCCGAAATTTAGTTCACGGCTCTCGAATTCTAGAAACAGACTCTCCCCTAACTGCAGGCGATTGGAGGGATTAACGAATCCGCAGCCCCCTCTCACCGATCTCGACCCCCGCCAGACGCCCATTGTGCAGGCCAAATTGTTGGAGCAACGAAGGCCAGGAAGCCCGTCGATGAACTCGGAGGAATCTGTGACGACAACATGCTTCCAAAGCAGTGTGGTCTGCGATCAGTACACACATGGAGGAACGAGAAAGCTTCTCAACTTATTCATCTAA 726 52.75 MSCNGCRVLRKGCSESCILRPCLQWIESAEAQAHATIFVAKFFGRAGLMSFISAVPESQRPCNLFFQPLSPTISLFQSLLFEACGRTVNPVNGAVGLLWTGNWHMCQQAVETVLRGGTLRALPEVFAGGASGSPSDETSDMDCTDIWKLRDPKFSSRLSNSRNRLSPNCRRLEGLTNPQPPLTDLDPRQTPIVQAKLLEQRRPGSPSMNSEESVTTTCFQSSVVCDQYTHGGTRKLLNLFI 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8119625 8120442 + Bma023048.1 Bma06g00353 83855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00353 241 MobiDBLite consensus disorder prediction 167 187 - -
Bma06g00353 241 Pfam Lateral organ boundaries (LOB) domain 2 112 IPR004883 -
Bma06g00353 241 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 241 - -
Bma06g00353 241 ProSiteProfiles LOB domain profile. 1 119 IPR004883 -
Bma06g00353 241 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 241 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma06g00353 Bma15g01117 CCT
Bma06g00353 Bma15g01117 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00676 Bma-Chr1:6168282 Bma06g00353 Bma-Chr6:8119625 4.34E-50 dispersed
Bma01g02251 Bma-Chr1:79682963 Bma06g00353 Bma-Chr6:8119625 4.75E-49 wgd
Bma15g01117 Bma-Chr15:44210380 Bma06g00353 Bma-Chr6:8119625 1.29E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57446 PF03195 LOB 1.50E-19 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00353 - - rcu:8283348 300.441