Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00380 ATGTGGGATCTGAATGACTCGCCTGATCAGAAAAGAGCCAGCGAATCCGATGGCTGTTCTTCCCCCAAGACTTCGATCGACGGCGACGACGACAAGGGAAAACGGGTGGGATCCTTTTCTAATTCCGGTTCTTCTGCAGTCGTAATAGAGGACGGATCGGACGATGAGGGCGGCGATAAAGAAGCGGGTGCCGAGAAAGGTAGCCGGACAAGCAAGTTATTTGGGCTTTCAACGGCTCAGGACTACATGGAAATGGACCATCCGGTAACCCGGCAGTTTTTTCCCGTGGAATTGTCCGAAGTGGGAGCGTCTCCTATGGGAGATGGCAACGGTGGCTCTTCGTTCCCTCGTGCTCGCTGGGTTGGGGTAAAATTTTGTCAGACGGAGCCTCTCGCTGCCACTAGGTCGTCGGTGGAGGCGGAGACTTCACAGCCGATGAAAAAGAGTCGCCGAGGGCCGAGGTCCCGTAGCTCCAAGTATCGTGGCGTCACGTTCTACCGGAGAACCGGCCGGTGGGAATCCCATATTTGGGATTGTGGGAAACAAGTTTATCTAGGTGGATTTGACACTGCACATGTAGCTGCTCGAGCTTACGATAGGGCAGCCATTAAATTCCGAGGAACAGAAGCTGACATAAATTTTAGCATCTACGACTATGAAGACGATCTGAAACAGATGAACAACTTGACGAAGGAAGAGTTTGTTCATGTTCTTCGCCGACAAAGCACTGGGTTTCCGAGAGGAAGCTCCAAATATAGAGGTGTAACTCTACACAAGTGTGGAAGATGGGAAGCTCGAATGGGCCAGTTTCTTGGCAAAAAGTATGTTTATTTGGGTTTGTTTGATACAGAGATTGAAGCTGCAAAGGCTTATGATAAAGCAGCCATCAAGTCTAATGGTAAAGACGCTGTCACCAATTTTGATCCAAGCATATACGAGAATGAGATCAACGGAAATGAATTATCGAACAAGGCAGTGGAACATAATCTGGATTTGAGTTTAGGAAACTCAAGCTCGAATCAAAGCAGTTTACCATTCGAGAATAACGGCAGAAACTGTGCACATCCATCTGCGACGTTGCCATTTAAATCGAATTGGCAAAACCAAGGATTTAGACCTCAGGATCGGTTGAGTGGGAATGGAAATGAGTATTTTCATTGTAGAGAGAGAAGCCTGGAGACTCAAACCATGCAACTTCTCAGCCAAGCCCATCTTCAACCTCATGATTACATTAATTCAGAGCTCAGACCACAAAATAATCAAACCCAGTTTTTAAGCAGCAGCAGCAATGGAGGTCGAGTTGGAAGTGATCTTTCACTGTCAATGAACGACCAGCAATGGCGATCCAGTTCTTCCCGACAGTTTGCAGTTGCTGCAGCATCATCAGGATTCCCTCCCCAAATTAGATCGACTTTCCAGAATCATTTTCTGCATAACAATGGATTTAGCTCTCTTCTGAGACCCTCTTAA 1470 47.21 MWDLNDSPDQKRASESDGCSSPKTSIDGDDDKGKRVGSFSNSGSSAVVIEDGSDDEGGDKEAGAEKGSRTSKLFGLSTAQDYMEMDHPVTRQFFPVELSEVGASPMGDGNGGSSFPRARWVGVKFCQTEPLAATRSSVEAETSQPMKKSRRGPRSRSSKYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHVAARAYDRAAIKFRGTEADINFSIYDYEDDLKQMNNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAAKAYDKAAIKSNGKDAVTNFDPSIYENEINGNELSNKAVEHNLDLSLGNSSSNQSSLPFENNGRNCAHPSATLPFKSNWQNQGFRPQDRLSGNGNEYFHCRERSLETQTMQLLSQAHLQPHDYINSELRPQNNQTQFLSSSSNGGRVGSDLSLSMNDQQWRSSSSRQFAVAAASSGFPPQIRSTFQNHFLHNNGFSSLLRPS 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10500226 10505649 - Bma023093.1 Bma06g00380 83882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00380 489 MobiDBLite consensus disorder prediction 1 72 - -
Bma06g00380 489 CDD AP2 250 310 IPR001471 GO:0003700|GO:0006355
Bma06g00380 489 Gene3D AP2/ERF domain 158 217 IPR036955 GO:0003700|GO:0006355
Bma06g00380 489 Gene3D AP2/ERF domain 250 309 IPR036955 GO:0003700|GO:0006355
Bma06g00380 489 SUPERFAMILY DNA-binding domain 250 310 IPR016177 GO:0003677
Bma06g00380 489 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 487 - -
Bma06g00380 489 ProSiteProfiles AP2/ERF domain profile. 251 308 IPR001471 GO:0003700|GO:0006355
Bma06g00380 489 MobiDBLite consensus disorder prediction 134 159 - -
Bma06g00380 489 Pfam AP2 domain 158 207 IPR001471 GO:0003700|GO:0006355
Bma06g00380 489 Pfam AP2 domain 250 297 IPR001471 GO:0003700|GO:0006355
Bma06g00380 489 ProSiteProfiles AP2/ERF domain profile. 159 215 IPR001471 GO:0003700|GO:0006355
Bma06g00380 489 SUPERFAMILY DNA-binding domain 158 216 IPR016177 GO:0003677
Bma06g00380 489 CDD AP2 159 214 IPR001471 GO:0003700|GO:0006355
Bma06g00380 489 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 487 - -
Bma06g00380 489 PRINTS Ethylene responsive element binding protein signature 290 310 IPR001471 GO:0003700|GO:0006355
Bma06g00380 489 PRINTS Ethylene responsive element binding protein signature 252 263 IPR001471 GO:0003700|GO:0006355
Bma06g00380 489 SMART rav1_2 251 314 IPR001471 GO:0003700|GO:0006355
Bma06g00380 489 SMART rav1_2 159 221 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00323 Bma-Chr3:2429169 Bma06g00380 Bma-Chr6:10500226 1.25E-12 dispersed
Bma03g01107 Bma-Chr3:14349161 Bma06g00380 Bma-Chr6:10500226 0 dispersed
Bma06g00380 Bma-Chr6:10500226 Bma09g00268 Bma-Chr9:14727677 7.03E-13 dispersed
Bma06g00380 Bma-Chr6:10500226 Bma07g00126 Bma-Chr7:1983908 9.11E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57448 PF00847 AP2 6.90E-10 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00380 K09284 - qsu:111995790 575.859