Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00396 ATGGAGTGGGTTCGTGGCCGCCAACTTGGTTTCGGTTCTTTTGCGACGGTCTCTTTGGCAGCTAGGAGAGACGATTCTGTCCTCCTTCCCCCTTTGATGGCCGTTAAATCTTCTCAACTCTTCTGCTCCCAATCGCTCAAGCACGAGAGAGAAGTTCTGCGTCAACTGGATTCTTGCCCGGAGATTATTCGCTGTTTTGGCTACGATTGCACCGTCGAAATGGGCGAGAAGTTATACAATCTCAATTTGGAGTACGCTTCCAGAGGCAGTCTGGTGGATCAACTGGAAAAGTATGGTGGTCGTTTGCCGGAATCGTTAGTTCGGCGATACACCAGAACGATACTTAAAGGTCTTGATTTCGTTCATTCTAAAGGGTTCGTCCACTGCGACATAAAGCTAGCAAATATTTTGATTGTCGACAATGGCAATGCTAAGATTGCTGATTTTGGATTGGCGAAGAGGGCTGGAGAAGAAATATCAAAGGAGAAAGGAAAATTTGAGTTGAGGGGAACGCCCCTGTCTATTGCTCCGGAATCCGTCACCGACAACGTGTACGAGCCGCCGTGCGACGTTTGGGCTCTTGCCTGTGCCATCGTGGAGATGTTCACCGGAAAACCCGCCTGGAATTTCAGCGACGAATTGAACATCTGTGCAGTACTCATGCGCATTGGCGTCGGAGAGGAGTTACCCACTATTCCGACTGATTTATCCGACGAAGGGAAAGATTTTCTGGACAAGTGCTTTGTAAGGGATCCAACAAAAAGATGGAGCGCTCAAATGCTTCTGAATCATCCTTTTGTGGCGGATGATTCTGTTCCATGGAAGAAATCTGTTGTTTCATCGCCGTCGCCAAGGTCTCATTTCGACTTGCCGGAGTGGCCTTCCTCCGAGTTGACTACTACTCTGACTATGGACTGTTCCCATTCGCTAACGGAAAACGCAACGAAATCTGATGGCCAATTCGAGACTAAACTGAACTTGCGTGTGGCTTCTCCTGCATACAGGCTCCGGCTGCTGGCGACGGCGGAGGCACCATCTGATTGGTGGGATTCGGAGGGTTCTATCAGTTCCGGTGCTTTTGCGACTGTCTATTTGGCAGCCAAGAGGGATGATTCCGATCTCTTCCCCCCTTTCGTGGCAGTTAAATCTTCTCAATTCTCCTTCTCTCAATCGCTCAGGCACGAGAGAGAAGTTCTGCGTCAACTCGATTCTTGCCCGGAGGTCATTCGCTGTTTCGGCAACGATATCAATGTCGAAAGGGGCGATAAGTTGTACAATCTCGTTTTGGAGTACGCTTCCGGAGGCAGTCTGGTGGATCAACTGGACAAGTACGGCAATCGTTTGCCGGAATCGTTAGTTCGGCGATACACCAGATCAATATTGAAAGGGCTTGATTTCATTCACTCCAAAGGGTTCGTCCACTGCGACATAAAACTGGGGAATATGTTGGTGGTCGACAATGGCGATGTTAAGATTGCCGATTTCGGGCTGGCGAAGAGGGTCGGGGAAGAAATATCAACGGAGGAACGAAACTTTGAGTTGAGGGGAACGCCTCTGTCTATTGCGCCGGAATCCGTCACCGACAATGAGTACGAGTCACCGTGCGACATTTGGGCTCTTGCCTGTGCCGTCGTGGAGATGTTCACCGGAAAACCAGCCTGGAATTTCAGCAAGAAATTGAACATCTGTGCGGTACTCATGCGAATCGGCGTCGGAAAGGAGTTGCCCACTATTCCGACTGATTTATCCGATGAGGGGAAGGATTTTCTGGAGAAATGTTTTATAAAGGATCCTACTAAAAGGTGGAGCGCTCAAATGCTCCTGAATCATCCATTTGCGGCGGATGATCCAATTCCATCGAAGCAACCAGTGGAGTCAGTGCCGTCGCCGAGAACTCCCTTCGAATTGCCGCATTGGGCCATCTCCGAGTCACGAACTACTCTCTACTCTTCCCATTCGTTTTCGGAAATCGCAATGGAAACTGAGGGGCCATTCGAGAGTGAACTGAATTTGTGCTTGGCTTCTCCGGTGGACAGGCTCCGGCTACTAGCTACAGCGGGTGCGGATTTTGATTGGTCTGTTGGAGTGGGTTGGGTCAACGTCAGGTGA 2109 49.88 MEWVRGRQLGFGSFATVSLAARRDDSVLLPPLMAVKSSQLFCSQSLKHEREVLRQLDSCPEIIRCFGYDCTVEMGEKLYNLNLEYASRGSLVDQLEKYGGRLPESLVRRYTRTILKGLDFVHSKGFVHCDIKLANILIVDNGNAKIADFGLAKRAGEEISKEKGKFELRGTPLSIAPESVTDNVYEPPCDVWALACAIVEMFTGKPAWNFSDELNICAVLMRIGVGEELPTIPTDLSDEGKDFLDKCFVRDPTKRWSAQMLLNHPFVADDSVPWKKSVVSSPSPRSHFDLPEWPSSELTTTLTMDCSHSLTENATKSDGQFETKLNLRVASPAYRLRLLATAEAPSDWWDSEGSISSGAFATVYLAAKRDDSDLFPPFVAVKSSQFSFSQSLRHEREVLRQLDSCPEVIRCFGNDINVERGDKLYNLVLEYASGGSLVDQLDKYGNRLPESLVRRYTRSILKGLDFIHSKGFVHCDIKLGNMLVVDNGDVKIADFGLAKRVGEEISTEERNFELRGTPLSIAPESVTDNEYESPCDIWALACAVVEMFTGKPAWNFSKKLNICAVLMRIGVGKELPTIPTDLSDEGKDFLEKCFIKDPTKRWSAQMLLNHPFAADDPIPSKQPVESVPSPRTPFELPHWAISESRTTLYSSHSFSEIAMETEGPFESELNLCLASPVDRLRLLATAGADFDWSVGVGWVNVR 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12952037 12956314 - Bma023136.1 Bma06g00396 83898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00396 702 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 317 - -
Bma06g00396 702 ProSiteProfiles Protein kinase domain profile. 349 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g00396 702 Gene3D Transferase(Phosphotransferase) domain 1 344 655 - -
Bma06g00396 702 Gene3D Transferase(Phosphotransferase) domain 1 2 325 - -
Bma06g00396 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Bma06g00396 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Bma06g00396 702 CDD STKc_MAPKKK 2 267 - -
Bma06g00396 702 CDD STKc_MAPKKK 355 612 - -
Bma06g00396 702 Pfam Protein kinase domain 353 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g00396 702 Pfam Protein kinase domain 5 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g00396 702 SUPERFAMILY Protein kinase-like (PK-like) 3 306 IPR011009 -
Bma06g00396 702 ProSiteProfiles Protein kinase domain profile. 3 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g00396 702 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 317 - -
Bma06g00396 702 SUPERFAMILY Protein kinase-like (PK-like) 344 654 IPR011009 -
Bma06g00396 702 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Bma06g00396 702 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 349 655 - -
Bma06g00396 702 SMART serkin_6 349 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g00396 702 SMART serkin_6 3 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g00396 702 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 349 655 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma06g00396 Bma09g00311 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00396 Bma-Chr6:12952037 Bma13g00651 Bma-Chr13:16074561 4.30E-68 dispersed
Bma06g00396 Bma-Chr6:12952037 Bma08g00642 Bma-Chr8:40560372 7.98E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66533 PF00069 Pkinase 3.20E-51 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00396 - - zju:107424505 384.8