Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00422 ATGTCATCGTCCAATTCTCCATGCGCGGCCTGCAAGCTTCTGAGGCGTAAATGTCCCCAAGAGTGTGTGTTTGCGCCGTATTTTCCACCAGATCAGCCTCAGAAATTCGCTAATGTTCATAAGGTGTTCGGCGCAAGCAACGTCTCCAAGCTACTCAATGAACTCGACGCTAGGCACCGTGAAGACGCAGTCAACTCTCTGGCGTACGAGGCGGAGTTTCGTCTCCGTGACCCAGTCTACGGCTGCGTCGGTCTGATCTCCGTCCTTCAGCACAGACTAAAGCAAATGAAGACCGATCTAATCAATGCCAAAAAAGAGCTCGCCAGCTACATCGGGCCTCAGGCAATTTTTCCTGTAATGCAACCTTCGACAGCGCTAATGGCGCAACAACATCCAGGAAATCCTTCTTCTTCTTCTCTGATGCCTTATAACATGCCGCCCATGATGGGTATCCCGACGGGTCCTTCTGGGCAACTTATGGTTCGTGAGCCTCATCAACAACAACAACCACAGCAGCAGCAGCAACAGCAACACCAGCTTCATCAACAACAGTTGTTTGAGGCTCAGCAATTGGCTGCAGCCGTTGCGGCTAGAGAGCACCAAGAGATGTTTAGGGCTTATGAGCAAAAACAACAACTAACTCACCACAGACACCATCCCCAGCCGCAGCAGCAAGAGCTTTTACGGTTGAATCCTGGTGGGTTTAATCAGCTGAATAACGCTTCTGCTTTATCACCTTCCTTGGCTCTGGGTACTCTTGATAATGCGTACCACCTTCAACCAGAGCTTTCGGAACATCCCCATACCCACCATCATCATCAACTTCAGCCTCAGCTTTTGCTCCAACCGCAGCAGCCACAACCACCTAATCTGGGACAGCAATCACAGCTTCTGCAGCAGCATAAGACAGAAGGTGAGGACGATAGAATTGTCGGTCCCTCTCATTGA 948 50.53 MSSSNSPCAACKLLRRKCPQECVFAPYFPPDQPQKFANVHKVFGASNVSKLLNELDARHREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHRLKQMKTDLINAKKELASYIGPQAIFPVMQPSTALMAQQHPGNPSSSSLMPYNMPPMMGIPTGPSGQLMVREPHQQQQPQQQQQQQHQLHQQQLFEAQQLAAAVAAREHQEMFRAYEQKQQLTHHRHHPQPQQQELLRLNPGGFNQLNNASALSPSLALGTLDNAYHLQPELSEHPHTHHHHQLQPQLLLQPQQPQPPNLGQQSQLLQQHKTEGEDDRIVGPSH 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15286261 15287237 + Bma023191.1 Bma06g00422 83924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00422 315 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 292 - -
Bma06g00422 315 MobiDBLite consensus disorder prediction 160 182 - -
Bma06g00422 315 MobiDBLite consensus disorder prediction 301 315 - -
Bma06g00422 315 Coils Coil 86 106 - -
Bma06g00422 315 MobiDBLite consensus disorder prediction 275 300 - -
Bma06g00422 315 MobiDBLite consensus disorder prediction 152 182 - -
Bma06g00422 315 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 1 292 - -
Bma06g00422 315 MobiDBLite consensus disorder prediction 266 315 - -
Bma06g00422 315 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Bma06g00422 315 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01181 Bma-Chr1:13295367 Bma06g00422 Bma-Chr6:15286261 1.34E-58 dispersed
Bma02g00579 Bma-Chr2:12612407 Bma06g00422 Bma-Chr6:15286261 9.16E-59 dispersed
Bma03g01098 Bma-Chr3:13857908 Bma06g00422 Bma-Chr6:15286261 2.01E-132 dispersed
Bma06g00422 Bma-Chr6:15286261 Bma12g01049 Bma-Chr12:42560363 2.30E-49 dispersed
Bma06g00414 Bma-Chr6:14605250 Bma06g00422 Bma-Chr6:15286261 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57452 PF03195 LOB 3.00E-40 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00422 - - jre:109018950 332.798