Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00432 ATGGCGTTAGGAAAGTATAGTAGAATAGACAATCGAAGGTCATCATCGAGCTACTGCTCAACAGTTACAATTGTTGTTTTTGTGGCTCTATGCTTGGTGGGTGTTTGGATGATGACCTCTTCATCTGTAGGACCTGTTCAAAATGTCGATGTTCAGCAGGAGAACAAAGATGATGTTAAGCAACCAGTGACTGAAAACACCGGAAGCAATGCTCAGCAATTTGAAGACAATCCTGGGGATTTGCCTGAGGATGCTAGGAAAGGAGATAGTAGTGAAGATTCTTCTAATCAGGATGGAAGCAATTCTTCCGAACAAAATAATACAGAAGAAAATCAAGAGGGGAAGCCTGAAGTAAAAACTGAAGAGAAGCGTGAGGAGACTTCTGAAGAAAAAAATAAAGAGGAAACTGGAAGAGATGAAGAACCAAAGTCAGAAGAGGGATCTAATTCTGAAACAGAAGCAGAAAGCAAAACCAATACTGATGAAACTAAAGATGTAAAGGGAGAATCAAATTCAGAATCGGGAGAGTCTAAGACTGAAAGCAAAGAAAGTGAGTCTGGTGGGCAGAATGAATCTGAGAATAGTTCTGAAGAAAAAAAAGCTGATGTAAGTGAAGAGGAGGAAAAATCTGAGGAAAGTGAGAAGAAATCAGAGAACTCAGATGAAGAAAAAGATAATAGTCAGATAGATGAGAAGGTCGAGCAAAATAACGACAGTCAATCAGATGAAACCACTGTTGACAATAACGAAAACAGTCAAAACCAGACTTCTACCGAAGTGTTTCCTTCTGGTGCTCAGTCTGAGCTATCAACTGAAAATTCTTCGCAAAGTGGTGCATGGTCAACCCAGGCGTCAGAGTCAAAAAATGAAAAGGAAGCTCAAAAATCTTCCAAGCAACAGACTGAGTACAATTGGAAACTTTGCAATGTCACTGCTGGGACAGATTATATCCCTTGCCTTGATAATTTGCTGGCTATTAAAAGTCTTCCAAGCACTAAGCATTATGAACATCGGGAGAGACACTGTCCAGAAGAGCCCCCTACTTGCCTTGTTCCACTTCCAGAAGGATATAAACGTTCTATTGCGTGGCCTAAAAGCAGGGATAAGATATGGTACTATAATGTTCCTCACACAAAGCTTGCTGAAGTCAAGGGACATCAAAATTGGGTGAAGGTGTCAGGTGAATTCCTTACCTTTCCAGGTGGAGGAACTCAATTTAAGCACGGTGCTCTTCACTACATTGACTTCATACAAGAGTCTGTGCCAGATGTTGCGTGGGGCAAACAGACTCGTGTGATCCTGGATGTTGGTTGTGGTGTTGCCAGCTTTGGGGGCTATCTATTTGAAAGAGATGTGCTAGCTATGTCATTTGCTCCAAAAGATGAACATGAAGCCCAAGTTCAGTTCGCTCTTGAAAGGGGTATTCCAGCAGTATCTGCTGTAATGGGTACTACCAGACTTCCTTACCCTGGAAGAGTCTTTGATGCTGTCCACTGTGCTCGCTGTAGAGTTCCTTGGCATATAGAAGGTGGAAAACTTCTTTTGGAGCTCAATCGTGTGTTGCGACCGGGTGGCTTCTTTGTGTGGTCTGCTACTCCAGTCTATCAAAAGCTTCCGGAAGATGCTGAAATATGGAATGCCATGGGTGAGCTTACAAAAGCTATGTGTTGGGAACTTATATCAATTAATAAGGACACAGTAAATGGAGTGGGTGTTGCTCTATATAAGAAACCTACAAATAACGAGTGTTATGAAAAAAGACAAAAACAAGAGCCTCTGATTTGTCCAGATTCAGATGATATAAATGCAGCCTGGAACGTACCATTGCAAGCATGTATGCACAAAATTCCGGTGGGAGCATCAGAACGTGGGTCCCAATGGCCAGAGCAATGGCCGCTAAGGTTGGAGAAACCACCTTACTGGTTATTGTCTTCCCGAGTAGGAGTTTATGGAAAAGCTGCTCCTGAGGATTTCACTTCAGATTATGAACACTGGAAGCATGTGGTGATCAACTCCTACGTAAATGTGATGGGCGTAGATTGGAAATCTTTCCGGAATGTCATGGACATGAGATCGATCTACGGAGGGTTTGCTGCGGCTTTAAAAAATTTGAATGTTTGGGTTATGAATGTGGTCTCTATAGACGCCCCAGATACACTGCCTATTATCTACGACCGAGGCTTGTTCGGCATATACCATGACTGGTGTGAATCCTTCAGCACCTACCCGAGATCTTACGATCTTCTTCATGCTGATCATCTCTTCTCCAAGGTTAAAAAGAGCAGGTGCAATCTAGTGGCTGTAGTTGCAGAGTGCGATAGAATCCTCAGACCCGAAGGAAAACTAATAATTCGGGACGATGCGGAGACGATCAGCGAGCTGGAAAACATGGCAAAATCAATGAAGTGGGAGGTCAGATTTTCTTATTTGAAGGACAATGAAGGATTGCTTTATGTCCAGAAGTCCATATGGCGACCAACAGAGTCAGAAACACTCAAGTATGCCATTCTTTAA 2514 42.68 MALGKYSRIDNRRSSSSYCSTVTIVVFVALCLVGVWMMTSSSVGPVQNVDVQQENKDDVKQPVTENTGSNAQQFEDNPGDLPEDARKGDSSEDSSNQDGSNSSEQNNTEENQEGKPEVKTEEKREETSEEKNKEETGRDEEPKSEEGSNSETEAESKTNTDETKDVKGESNSESGESKTESKESESGGQNESENSSEEKKADVSEEEEKSEESEKKSENSDEEKDNSQIDEKVEQNNDSQSDETTVDNNENSQNQTSTEVFPSGAQSELSTENSSQSGAWSTQASESKNEKEAQKSSKQQTEYNWKLCNVTAGTDYIPCLDNLLAIKSLPSTKHYEHRERHCPEEPPTCLVPLPEGYKRSIAWPKSRDKIWYYNVPHTKLAEVKGHQNWVKVSGEFLTFPGGGTQFKHGALHYIDFIQESVPDVAWGKQTRVILDVGCGVASFGGYLFERDVLAMSFAPKDEHEAQVQFALERGIPAVSAVMGTTRLPYPGRVFDAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFVWSATPVYQKLPEDAEIWNAMGELTKAMCWELISINKDTVNGVGVALYKKPTNNECYEKRQKQEPLICPDSDDINAAWNVPLQACMHKIPVGASERGSQWPEQWPLRLEKPPYWLLSSRVGVYGKAAPEDFTSDYEHWKHVVINSYVNVMGVDWKSFRNVMDMRSIYGGFAAALKNLNVWVMNVVSIDAPDTLPIIYDRGLFGIYHDWCESFSTYPRSYDLLHADHLFSKVKKSRCNLVAVVAECDRILRPEGKLIIRDDAETISELENMAKSMKWEVRFSYLKDNEGLLYVQKSIWRPTESETLKYAIL 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 16326767 16331152 + Bma023207.1 Bma06g00432 83934

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00432 837 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 653 814 IPR029063 -
Bma06g00432 837 MobiDBLite consensus disorder prediction 94 109 - -
Bma06g00432 837 MobiDBLite consensus disorder prediction 110 238 - -
Bma06g00432 837 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 315 819 IPR004159 GO:0008168
Bma06g00432 837 Gene3D Vaccinia Virus protein VP39 406 565 IPR029063 -
Bma06g00432 837 MobiDBLite consensus disorder prediction 239 287 - -
Bma06g00432 837 MobiDBLite consensus disorder prediction 53 300 - -
Bma06g00432 837 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 338 600 IPR029063 -
Bma06g00432 837 CDD AdoMet_MTases 433 528 - -
Bma06g00432 837 MobiDBLite consensus disorder prediction 79 93 - -
Bma06g00432 837 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 4 834 IPR004159 GO:0008168
Bma06g00432 837 PANTHER PMT26-LIKE PROTEIN, PUTATIVE-RELATED 4 834 - -
Bma06g00432 837 Coils Coil 196 223 - -
Bma06g00432 837 MobiDBLite consensus disorder prediction 62 76 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00432 - - - jre:108996285 1196.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02319 Bma-Chr1:80708513 Bma06g00432 Bma-Chr6:16326767 3.81E-06 dispersed
Bma06g00432 Bma-Chr6:16326767 Bma06g01603 Bma-Chr6:52213955 7.43E-146 dispersed
Bma15g00971 Bma-Chr15:37348904 Bma06g00432 Bma-Chr6:16326767 0 dispersed
Bma06g00432 Bma-Chr6:16326767 Bma09g00097 Bma-Chr9:2610934 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1331 . . . . . Bpe13g00070 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma06g00432 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000953 3 2 4 3 4 2 4 2 2 3 2 2 4 2 2 4 2 6 4 2 3 2 2 2 2 2 2 5 3 3 85
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00432 Bma_Chr06 FPKM 9.438737 11.087689 8.993289 9.580115 9.039019 8.2112 8.839962 17.38172 17.746861 18.28163