Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00441 ATGAGCTTCCAAGATTTTCAGAAGCCGAATGCTGGTATGGCAAATCCTGCCGCCGCGCACAACCCATCGCAGGCCGTAGCCGCATCCATATTTCAGATCAACACCGCTGTTTCCACCTATCGTCGTCTCGTTGATGCAATCGGTACCGTGAAGGATACTCCGGATCTCCGGCAAAAGCTACAGGCAACCAGACAGAAAATTCTGCAACTCGTGAAAGATACTTCTGCCAAACTAAAATCATTGACTGAATCCAATCGCGATAGCAATGTTACACCAAACAAGAAAATCGAAGATGCTAAACTCGCCAAAGACTTCCAAACTGTTCTGCAAGAATTTCAGAAAGTTCAACAGCTTGCCTCAGAGCGTGAATCAACTTACGCACCTTCAGGTCCTCCATTGTCATCTTCATCCATCTCTATCTCCAGCGAGCCCACCATGGATCAGGACAGCCAACCCTTCCTTATGCAGCAAAAAAGGCAGGAGTTGATCTTGCTGGACAATGAAATTGGTTTCAATGAAGCTGTAATCGATGAGAGGGAACAGGGCATCAGAGACATAGAGGAGCAAATTGGAGAAGCAAATGAAATATTCAGAGACCTTGCTGTTCTAGTTCATGAGCAGGGTGTGGTCATTGATGATATTCATTCAAACATCGACTCCTCTGCCGTTGCGACAACTCAAGCTCGAGTCCAGTTGGCCAAGGCTTCCAAAAGCACGAAAACCAGATCGTCATGGTGTTGGTGGGTGATAGGAATCGTTATCATCGTTGTGGTGGTTGTTGTTCTTCTCGCCGTACTTTTGTAG 804 46.52 MSFQDFQKPNAGMANPAAAHNPSQAVAASIFQINTAVSTYRRLVDAIGTVKDTPDLRQKLQATRQKILQLVKDTSAKLKSLTESNRDSNVTPNKKIEDAKLAKDFQTVLQEFQKVQQLASERESTYAPSGPPLSSSSISISSEPTMDQDSQPFLMQQKRQELILLDNEIGFNEAVIDEREQGIRDIEEQIGEANEIFRDLAVLVHEQGVVIDDIHSNIDSSAVATTQARVQLAKASKSTKTRSSWCWWVIGIVIIVVVVVVLLAVLL 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 16972276 16974113 - Bma023221.1 Bma06g00441 83943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00441 267 PANTHER SYNTAXIN 16 263 IPR045242 -
Bma06g00441 267 SMART SynN_4 11 124 IPR006011 GO:0016020
Bma06g00441 267 PANTHER SYNTAXIN-22-LIKE 16 263 - -
Bma06g00441 267 Gene3D - 171 266 - -
Bma06g00441 267 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 173 235 IPR000727 -
Bma06g00441 267 CDD SNARE_Qa 176 234 - -
Bma06g00441 267 Pfam SNARE domain 210 261 IPR000727 -
Bma06g00441 267 Gene3D - 12 129 - -
Bma06g00441 267 Pfam Syntaxin-like protein 27 126 IPR006011 GO:0016020
Bma06g00441 267 MobiDBLite consensus disorder prediction 120 149 - -
Bma06g00441 267 SUPERFAMILY t-snare proteins 21 228 IPR010989 GO:0016020|GO:0016192
Bma06g00441 267 SMART tSNARE_6 168 235 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01234 Bma-Chr1:15538420 Bma06g00441 Bma-Chr6:16972276 8.46E-151 dispersed
Bma05g00704 Bma-Chr5:41032743 Bma06g00441 Bma-Chr6:16972276 5.15E-42 dispersed
Bma06g00441 Bma-Chr6:16972276 Bma12g00507 Bma-Chr12:16198148 1.34E-12 dispersed
Bma06g00441 Bma-Chr6:16972276 Bma12g00235 Bma-Chr12:3044573 1.47E-86 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00441 - K08488 fve:101306155 353.984