Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma06g00441 | ATGAGCTTCCAAGATTTTCAGAAGCCGAATGCTGGTATGGCAAATCCTGCCGCCGCGCACAACCCATCGCAGGCCGTAGCCGCATCCATATTTCAGATCAACACCGCTGTTTCCACCTATCGTCGTCTCGTTGATGCAATCGGTACCGTGAAGGATACTCCGGATCTCCGGCAAAAGCTACAGGCAACCAGACAGAAAATTCTGCAACTCGTGAAAGATACTTCTGCCAAACTAAAATCATTGACTGAATCCAATCGCGATAGCAATGTTACACCAAACAAGAAAATCGAAGATGCTAAACTCGCCAAAGACTTCCAAACTGTTCTGCAAGAATTTCAGAAAGTTCAACAGCTTGCCTCAGAGCGTGAATCAACTTACGCACCTTCAGGTCCTCCATTGTCATCTTCATCCATCTCTATCTCCAGCGAGCCCACCATGGATCAGGACAGCCAACCCTTCCTTATGCAGCAAAAAAGGCAGGAGTTGATCTTGCTGGACAATGAAATTGGTTTCAATGAAGCTGTAATCGATGAGAGGGAACAGGGCATCAGAGACATAGAGGAGCAAATTGGAGAAGCAAATGAAATATTCAGAGACCTTGCTGTTCTAGTTCATGAGCAGGGTGTGGTCATTGATGATATTCATTCAAACATCGACTCCTCTGCCGTTGCGACAACTCAAGCTCGAGTCCAGTTGGCCAAGGCTTCCAAAAGCACGAAAACCAGATCGTCATGGTGTTGGTGGGTGATAGGAATCGTTATCATCGTTGTGGTGGTTGTTGTTCTTCTCGCCGTACTTTTGTAG | 804 | 46.52 | MSFQDFQKPNAGMANPAAAHNPSQAVAASIFQINTAVSTYRRLVDAIGTVKDTPDLRQKLQATRQKILQLVKDTSAKLKSLTESNRDSNVTPNKKIEDAKLAKDFQTVLQEFQKVQQLASERESTYAPSGPPLSSSSISISSEPTMDQDSQPFLMQQKRQELILLDNEIGFNEAVIDEREQGIRDIEEQIGEANEIFRDLAVLVHEQGVVIDDIHSNIDSSAVATTQARVQLAKASKSTKTRSSWCWWVIGIVIIVVVVVVLLAVLL | 267 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 16972276 | 16974113 | - | Bma023221.1 | Bma06g00441 | 83943 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma06g00441 | 267 | PANTHER | SYNTAXIN | 16 | 263 | IPR045242 | - | |
Bma06g00441 | 267 | SMART | SynN_4 | 11 | 124 | IPR006011 | GO:0016020 | |
Bma06g00441 | 267 | PANTHER | SYNTAXIN-22-LIKE | 16 | 263 | - | - | |
Bma06g00441 | 267 | Gene3D | - | 171 | 266 | - | - | |
Bma06g00441 | 267 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 173 | 235 | IPR000727 | - | |
Bma06g00441 | 267 | CDD | SNARE_Qa | 176 | 234 | - | - | |
Bma06g00441 | 267 | Pfam | SNARE domain | 210 | 261 | IPR000727 | - | |
Bma06g00441 | 267 | Gene3D | - | 12 | 129 | - | - | |
Bma06g00441 | 267 | Pfam | Syntaxin-like protein | 27 | 126 | IPR006011 | GO:0016020 | |
Bma06g00441 | 267 | MobiDBLite | consensus disorder prediction | 120 | 149 | - | - | |
Bma06g00441 | 267 | SUPERFAMILY | t-snare proteins | 21 | 228 | IPR010989 | GO:0016020|GO:0016192 | |
Bma06g00441 | 267 | SMART | tSNARE_6 | 168 | 235 | IPR000727 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g01234 | Bma-Chr1:15538420 | Bma06g00441 | Bma-Chr6:16972276 | 8.46E-151 | dispersed | |
Bma05g00704 | Bma-Chr5:41032743 | Bma06g00441 | Bma-Chr6:16972276 | 5.15E-42 | dispersed | |
Bma06g00441 | Bma-Chr6:16972276 | Bma12g00507 | Bma-Chr12:16198148 | 1.34E-12 | dispersed | |
Bma06g00441 | Bma-Chr6:16972276 | Bma12g00235 | Bma-Chr12:3044573 | 1.47E-86 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma06g00441 | - | K08488 | fve:101306155 | 353.984 |