Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00472 TTGCCGATGAACTTGATTGGTGATGCTGCAATCGGCGAATCCTCCGTCGGGAGTGGCCGGACGGTGGTTGTCGGCGTCAAGTTGGAGTCGGAATGCCGGGAATTGCTCACTTGGACTCTTCTTAAAGTGGCTCAGCCTGGTGACCTTGTCATTGCACTTCACGTCCTCGATGCCTTCACTGAGACTCCGTCGTCGCTGCTATCTCTGGTGAAGGAGTTGCATTCCGTTCTGTCAGTGTACGAAACTTTCTGCGACCTGAAGCAGGTATGTTTGAAACTGAAAGTATGCCGTGGATCTCCTGTTCATAAAATCATCAAACGGGAAGTCGACTCATTTGATGAGGCCATATTAATTGTTGGAATTTCTAAATCTCGCCATAGAATTCATTCGTCAGCATCTGTTGCCAAGTACTGTGCAAGAAGATTATCCAAAAAATTTCGAATTCTTGCAGTTAACAAAGGCAAAATTTTGTTTCATAGAGAAGCAACTCTATCTGCCCACAAATTTCAAGACAAGGATGGCAATGGAAATTGCGTTGGCTTTGTTTGCTATTCACCTAGTCAGAGTTTTAAAGTACCTGATAGAGCAAAGGCTTCAATGATGGATGTAAAGCAGGACGGTTTTCACCACCATTTGTTGCTAAAATATGTTTCAGGTTTGAAGAAATATCTAAAGGGAAATGTGACTAATGAAAAATCTTTGAGCGGATCTGAAAATAATGATGCTCAGGTGATGAATGAGCCAACCTCGTCTAGCAATAACAGTGAGGGCAATTCATTTACTTTGGTACCACAGCGACAATCAGTGCAAAGAAATACCAGCTGGCCAAACCTTCGGCGGATATTTTTATCGAAGAGACATCTGAGAACAATGTCCATGACCGAGGATTTTTGTTCTTCACCTATTGCCTATTCAGATCTGGAACATTGCAAATCTGATCTGGATCAATGTTCAAATGTTGACAGGGAGGATGCTTCTTTTCTGCCCGTCGAGGCTACTCCTCATCAATCTTTAGGGAGCCTTCCAGAAGGGTTATTGTCCTTGACTAATAAGTGCTCCTGCACTTGCAGATTATTCACCTATGAAGAACTTTCGTTAGCAACCTCAAACTTCATTCCCGAGAATATGGTGGGTAAAGGCGGTAGTAGTCATGTTTATAGAGGTTGTCTTCCAGATGGCAACGAACTGGCAGTGAAGATCTTAAAACCATCAGGAGATGTTCTGAAGGAGTTTGTTCAGGAAATTGAAATCATAACATCTTTGCGTCATAAGAACATTATATCTTTATCTGGCTTCTGTTTTGAGGATCCTAAATTACTATTGGTGTACAATTTTCTGTCAAGAGGGAGCTTAGAAGTTAATCTTCATGGTAATAAAAAGGATTCAAGTATATTCGGTTGGCAAGAGAGATTTAAGGTTGCTCTTGGAGTTGCAGAGGCTGTAGACTATCTCCACCATGGTTGTGATGAACCTGTGATCCACAGAGACGTGAAGTCCTCTAACATTCTTCTCTCACAGGATTTCGAGGCGCAGGTATCTTGCTTTCTGTACCTCGCACCGGAGTACTTCATGTATGGGAAAGTAAGTGAGAAAATTGATATATATGCATTTGGTGTCGTACTCCTGGAACTACTTTCAGGTCGGAAACCGATCAACAGGGACAATCCCAGGGGACAAGAAAACCTTGTAATGTGGGCTAAGCCAATATTGAAGGAAGGGAAAATTTCTCAGTTATTGGATCCTTGCCTGGGAAGTGATTACAACCAGGATCAGATAGGAAGAATGATATTAGCTGCCACCCTCTGCATTAGACGCTCTCCTAAGTTACGTCCTAAAATGGCTCTTGTTTTGAAACTTTTACAAGGCGATGAGGAAGTAAATAATTGGGCAAGGCGGCAGGTTCACCAAATGGAAGAACTCGATGCCATTGATGGAGAACCATTAGCTTCTAACATACAATCCCACCTCAACCTTGTTTTTGTAGATTTACATGACGATTCACTTTCAGTTAACAGCAACGAGCAATGCATCTCCGTAGAAGATTACTTGCGGGGGAGATGGAGCCGCTCATCTAGCTTCACTTAG 2085 42.64 LPMNLIGDAAIGESSVGSGRTVVVGVKLESECRELLTWTLLKVAQPGDLVIALHVLDAFTETPSSLLSLVKELHSVLSVYETFCDLKQVCLKLKVCRGSPVHKIIKREVDSFDEAILIVGISKSRHRIHSSASVAKYCARRLSKKFRILAVNKGKILFHREATLSAHKFQDKDGNGNCVGFVCYSPSQSFKVPDRAKASMMDVKQDGFHHHLLLKYVSGLKKYLKGNVTNEKSLSGSENNDAQVMNEPTSSSNNSEGNSFTLVPQRQSVQRNTSWPNLRRIFLSKRHLRTMSMTEDFCSSPIAYSDLEHCKSDLDQCSNVDREDASFLPVEATPHQSLGSLPEGLLSLTNKCSCTCRLFTYEELSLATSNFIPENMVGKGGSSHVYRGCLPDGNELAVKILKPSGDVLKEFVQEIEIITSLRHKNIISLSGFCFEDPKLLLVYNFLSRGSLEVNLHGNKKDSSIFGWQERFKVALGVAEAVDYLHHGCDEPVIHRDVKSSNILLSQDFEAQVSCFLYLAPEYFMYGKVSEKIDIYAFGVVLLELLSGRKPINRDNPRGQENLVMWAKPILKEGKISQLLDPCLGSDYNQDQIGRMILAATLCIRRSPKLRPKMALVLKLLQGDEEVNNWARRQVHQMEELDAIDGEPLASNIQSHLNLVFVDLHDDSLSVNSNEQCISVEDYLRGRWSRSSSFT 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22032634 22036166 + Bma023300.1 Bma06g00472 83974

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00472 694 PANTHER OS01G0253100 PROTEIN 16 515 IPR045271 GO:0004714|GO:0006468
Bma06g00472 694 Pfam Protein kinase domain 375 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g00472 694 Gene3D Transferase(Phosphotransferase) domain 1 446 639 - -
Bma06g00472 694 Pfam Universal stress protein family 20 143 IPR006016 -
Bma06g00472 694 ProSitePatterns Protein kinases ATP-binding region signature. 377 399 IPR017441 GO:0005524
Bma06g00472 694 MobiDBLite consensus disorder prediction 231 268 - -
Bma06g00472 694 CDD USP_Like 21 141 - -
Bma06g00472 694 PANTHER OS01G0253100 PROTEIN 515 688 IPR045271 GO:0004714|GO:0006468
Bma06g00472 694 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 16 515 - -
Bma06g00472 694 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 515 688 - -
Bma06g00472 694 SMART serkin_6 371 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g00472 694 SUPERFAMILY Protein kinase-like (PK-like) 353 620 IPR011009 -
Bma06g00472 694 Gene3D Phosphorylase Kinase; domain 1 345 445 - -
Bma06g00472 694 ProSiteProfiles Protein kinase domain profile. 371 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g00472 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 492 504 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00472 - - - mcha:111017492 744.962
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma06g00472 Bma15g00776 CCT
Bma06g00472 Bma15g00776 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00797 Bma-Chr1:7486709 Bma06g00472 Bma-Chr6:22032634 4.53E-12 dispersed
Bma06g00472 Bma-Chr6:22032634 Bma15g00776 Bma-Chr15:16448120 0 dispersed
Bma06g00472 Bma-Chr6:22032634 Bma09g00438 Bma-Chr9:38216601 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1322 . Blo16g00554 . . . Bpe13g00054 . Bma15g00776 Cmo02g00650 Cmo20g01056 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00187 . . Bpe10g00266 Bpe06g00305 . Bma06g00472 . . . . Cma20g01050 . . Cpe05g01044 Cpe16g00096 Bhi10g01716 . . . . . . Cla02g00030 . . . . . . Lsi10g00758 . . Cme11g00032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005017 2 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 0 1 1 1 0 0 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66536 PF00069 Pkinase 2.50E-28 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00472 Bma_Chr06 FPKM 44.880241 46.849033 37.303867 36.874519 46.203598 57.953682 50.977345 49.337402 50.559608 46.864742