Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00499 ATGGACGATTTAAAACGCCGGAAACCTGGTTCTCGCCGGGAAAATCAACATCGTCTGAGTTCTTGGTGTTGCTCACTCACTGTTCCACCTACTAGCCCTGAGAATGTCGCAGTTCATCGCTCAAAAACCGTCCGAAACAAGTCTGGAAGGTCCGATATTATTTCGAAATCTACTAACTCGGTCACCAGCTCCCCTCTAAGTTCCAAATCCGGGTTTGGATTGGTGGGTCGGATGGACCGTCGCTTTTCCCCCGGTAGGGTTTCCCCTATCGATCCTGATTACCCTACCGTCCATTCGATGCAAGAAATTGGCTCCGATCCATCTGGAGTTTCTAGGCTGATGAGCCGATCGCGATCGGAAAGCTTTAGGGCTCCGGCTGAGAAGTTTGGGGCGCTGCCAGATGTTTTGTCACGCTCTAGCTCCAGTTTTGGGGGTAGTGGGAGGGAAGTATTTGACGTTAGGTTGAAATTGAAGGGAAAGAGTGGCGGTTGCTTGATTTTGGAGATGAATTCTGGGATTTTGAGTGCGAATTCTGAGGTTTTTGCGGGTTTAATTGCGGAGCACAAGAAGGGTTCAACGGCAATCGATTGTTCTTCAGGATTCAAAATATGCAGGATAGAAGTGCCTAATGTGGAAAATTTGGTGGTGTTTAAGCAAACCATTGAGCTTATGTTCGAGGATGATATAACCAAAAGGCTTTTGAAACTTGGGGTTTATCGGGCTATCGACGTACTTGAGGTTAGTGCTTGA 750 47.47 MDDLKRRKPGSRRENQHRLSSWCCSLTVPPTSPENVAVHRSKTVRNKSGRSDIISKSTNSVTSSPLSSKSGFGLVGRMDRRFSPGRVSPIDPDYPTVHSMQEIGSDPSGVSRLMSRSRSESFRAPAEKFGALPDVLSRSSSSFGGSGREVFDVRLKLKGKSGGCLILEMNSGILSANSEVFAGLIAEHKKGSTAIDCSSGFKICRIEVPNVENLVVFKQTIELMFEDDITKRLLKLGVYRAIDVLEVSA 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 24106201 24106950 - Bma023348.1 Bma06g00499 84001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00499 249 MobiDBLite consensus disorder prediction 1 20 - -
Bma06g00499 249 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 12 249 IPR038920 -
Bma06g00499 249 PANTHER OS04G0278000 PROTEIN 12 249 - -
Bma06g00499 249 MobiDBLite consensus disorder prediction 43 70 - -
Bma06g00499 249 MobiDBLite consensus disorder prediction 48 70 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00499 - - - mnt:21403597 251.521
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g01023 Bma06g00499 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00499 Bma-Chr6:24106201 Bma09g00339 Bma-Chr9:29462782 5.49E-09 dispersed
Bma06g00499 Bma-Chr6:24106201 Bma03g01023 Bma-Chr3:11381710 2.49E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1297 Blo04g00957 Blo16g00538 . . Bpe15g00410 . . . . . Cma03g01096 Cma07g00804 Car03g00987 Car07g00790 Sed14g0231 Cpe19g00526 . Bhi03g01346 Tan03g1304 Cmetu08g2020 . Hepe04g1110 . . Cla01g01513 Cam01g1582 Cec04g1225 Cco04g1295 Clacu01g1607 Cmu01g1494 Cre04g1173 . . . . Lsi01g01153 . . Cme08g01087 . . Bda11g01378 Bda14g01048 . . Bma03g01023 Bma06g00499 . Cmo03g01081 Cmo07g00828 . . . . . . . . . . . . . . . . . . . . . Csa06g02777 Chy02g01058 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004566 3 1 2 3 1 2 2 2 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00499 Bma_Chr06 FPKM 11.759523 10.748481 12.397619 14.759831 10.867606 7.62009 10.317776 26.956011 29.326698 27.720671