Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00513 ATGTTGACCTCTATTGGGGAAGAAAATGACGTCTTTTTCGACTCAGCTGAATTCTTGGTAACAGAAGAAGACCTGGACTATGAAATCTGGAGAAATGCGCCTCAAAGTGTTGTGAAAAGAAGAGAAAGTTTTCTATCTGGAATGGGTTTGACCGAATTGGTTTCTTCAAATGCCTTTGAGCAAAATGCAAGAAACAATGGGCTGGATAGGGTCACAGAGCTCAGTGGAGCCGTCCGGAGCTCTGACATCGATGACTGTCAGTCAAGGGAGTCTGATGAAGATGAAAAAAACAGTTCAAATGCGAAAATGTTAGACGAGGAAGAGTCGGGGGAGTGTGTAAGGAGTGTAGCTGAGGCTGATGCGAATAATTGTGAGAGTTTCGATGTTGGCAAAAGGAGAACCAAGAGATGGTGGAAATTCTTCATGAAGCATAGGAAAGAACAAGCGAATTTTGTTTCGTCGGGGTCAAAAAGGATCCCTGAAAACTCGAGAAGATGTCGAATTAAGGTGAGGCAGAGCAAGAGGAAGTTCATGGAACTTACTGCTTTGTATGTTAGACAAGAGTTTCAAGCTCATGAAGGGTTCATTTGGGCAATGAAGTTCAGCCCAGATGGTCAATATCTAGCCAGTGGAGGAGAGGATGGAGTTGTTCGTATTTGGCGTGTTACCCTCATCGATGCTTCGAGTAAGTATTTAATAAATGAAGGCGAGATTGACGAGAAATTGAGTCAAGGGAAGTCCAATTTTCGGACCAAATCCTCGTGCCGGGCTGCTCTTCTCCTTCCGAAGAAGCTTTTTCGGATTGAAGAATCGCCAATCCAGGAGTTTCGTGGCCATTCTAGTGATGTTTTGGACCTTGCTTGGTCCAATTCCAATTGCCTTCTTTCTTCTTCAATGGATAAAACAGTTCGGCTATGGCAAGTTGGTTGTGACAGATGCTTAGGAGTTTTCCATCACCAGAATTATGTTACGTGCATCCAATTCAACCCCGTCGATGAGAATTATTTTATCAGTGGTTCCGTCGATGGAAAAGTAAGGATCTGGGGAGTGTCAGAGAAACGAGTTGTAGACTGGGCCGAGGTTCGAGACATAATCACTGCTATATCTTACCAACCAAATGGCAAAGTATTTGTAGTAGGCTCAGTTTTAGGCACCTGCCGTTTCTACGAAGCATCAGGTGAACATTGCCGGCTTATTGCTGAGATACACATTGAAGGCAGAAAGAAAGTGTCGAGAAAAAGAATTACCGGCATACAGGTTTTTATTGTAATTCTTTGCTTTGTTGCCGATAAAGTTCAATGCATTCTCTGTGTCTCATCTCGACTATCGAATGCCAGTTTTCTCACGAAAGCTTTCAAAGGGTGA 1365 43.37 MLTSIGEENDVFFDSAEFLVTEEDLDYEIWRNAPQSVVKRRESFLSGMGLTELVSSNAFEQNARNNGLDRVTELSGAVRSSDIDDCQSRESDEDEKNSSNAKMLDEEESGECVRSVAEADANNCESFDVGKRRTKRWWKFFMKHRKEQANFVSSGSKRIPENSRRCRIKVRQSKRKFMELTALYVRQEFQAHEGFIWAMKFSPDGQYLASGGEDGVVRIWRVTLIDASSKYLINEGEIDEKLSQGKSNFRTKSSCRAALLLPKKLFRIEESPIQEFRGHSSDVLDLAWSNSNCLLSSSMDKTVRLWQVGCDRCLGVFHHQNYVTCIQFNPVDENYFISGSVDGKVRIWGVSEKRVVDWAEVRDIITAISYQPNGKVFVVGSVLGTCRFYEASGEHCRLIAEIHIEGRKKVSRKRITGIQVFIVILCFVADKVQCILCVSSRLSNASFLTKAFKG 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26694669 26696649 - Bma023386.1 Bma06g00513 84015

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00513 454 Pfam WD domain, G-beta repeat 271 306 IPR001680 GO:0005515
Bma06g00513 454 Pfam WD domain, G-beta repeat 187 220 IPR001680 GO:0005515
Bma06g00513 454 Pfam WD domain, G-beta repeat 312 348 IPR001680 GO:0005515
Bma06g00513 454 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 8 420 - -
Bma06g00513 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 316 348 - -
Bma06g00513 454 Gene3D - 263 444 IPR015943 GO:0005515
Bma06g00513 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 189 222 - -
Bma06g00513 454 PANTHER WD REPEAT DOMAIN 44 8 420 IPR040324 -
Bma06g00513 454 MobiDBLite consensus disorder prediction 79 109 - -
Bma06g00513 454 Gene3D - 79 232 IPR015943 GO:0005515
Bma06g00513 454 SUPERFAMILY WD40 repeat-like 182 404 IPR036322 GO:0005515
Bma06g00513 454 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Bma06g00513 454 PRINTS G protein beta WD-40 repeat signature 336 350 IPR020472 -
Bma06g00513 454 PRINTS G protein beta WD-40 repeat signature 294 308 IPR020472 -
Bma06g00513 454 MobiDBLite consensus disorder prediction 83 109 - -
Bma06g00513 454 SMART WD40_4 310 349 IPR001680 GO:0005515
Bma06g00513 454 SMART WD40_4 182 221 IPR001680 GO:0005515
Bma06g00513 454 SMART WD40_4 269 307 IPR001680 GO:0005515
Bma06g00513 454 SMART WD40_4 351 390 IPR001680 GO:0005515
Bma06g00513 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 308 - -
Bma06g00513 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 308 IPR001680 GO:0005515
Bma06g00513 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 222 IPR001680 GO:0005515
Bma06g00513 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 358 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00513 K20241 WDR44, RAB11BP; WD repeat-containing protein 44 - tcc:18611795 460.299
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g01033 Bma06g00513 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00513 Bma-Chr6:26694669 Bma15g00824 Bma-Chr15:20240482 1.17E-155 dispersed
Bma06g00505 Bma-Chr6:25250304 Bma06g00513 Bma-Chr6:26694669 0 proximal
Bma03g01033 Bma-Chr3:11964516 Bma06g00513 Bma-Chr6:26694669 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1267 Blo04g00968 . . Bda10g00359 Bpe15g00398 . . . . . Cma03g01085 Cma07g00791 Car03g00975 Car07g00777 . . . Bhi03g01375 . . . Hepe04g1122 . . Cla01g01526 Cam01g1596 Cec04g1240 Cco04g1310 Clacu01g1620 Cmu01g1506 Cre04g1185 . . Cone6ag1293 . Lsi01g01138 . . Cme08g01072 . . . Bda14g01058 . Bpe06g00273 Bma03g01033 Bma06g00513 . Cmo03g01072 Cmo07g00814 . . . . . . . . . . . . . . . . . . . . . Csa06g02793 Chy02g01042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003346 3 4 4 4 4 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 1 3 1 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00513 Bma_Chr06 FPKM 0.9 1.304171 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0