Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00533 ATGGATACAGGCGGTCGACTCATTGCTGGCTCTCACAATCGAAATGAGTTTGTCCTCATCAATGCTGAAGAAAATGGGCGAATCAAGTCTGTGAAAGAGTTGAGTGGCCAAGTATGCCATATTTGCGGGGATGAGATAGAAATCACGTTCGACGGAGATCCGTTCGTCGCCTGTAACGAATGCGCTTTCCCTGTGTGTAGACCTTGCTACGAATACGAGAGAAGAGAGGGAAATCAAGCCTGCCCTCAGTGTAAAACTAGATATAAACGCATCAAAGGCAGTCCAAGGGTTGATGGTGATGAGGAAGAAGATGACATTGATGATTTGGACAATGAATTTGACTACGGAAACCTTGACGGAGTGGGGTCGACAGAAGCTGCTATGCTTGGTTCTCGATACAACACTGTCCGTAGTTCATCTGGAATTCCCATTCATGTGGAAAACAAATCCTCTTCTGTCCCCACTGAGATCCCGTTACTTACTTATGGCGAGGAGGATTCTGATATATCTTCTGATCGTCATGCTCTTATCGTGCCACCTTTTATGGATCATCGAAACAAAGTTCATCATATGCCTTCTTCTGATCCTTCCACAAGTTTGCAAACCAGACCTATGGTTCCTAAGAAAGACATTGCAGTTTATGGGTATGGGAGTGTAGCATGGAAGGACAGAATGGATGAGTGGAAGAGAAGGCAAAATGAGAAACTTCAGGTGATGAAGCACCACGACAGTGGTGGTAAATATGACGAAAACGATCTTGATGATGCTGATATCCCCATGATGGATGAGGGGAGGCAGCCACTATCGAGGAAATTACCCATCTCTTCAAGCAAGATAAATCCGTACAGATTAATTATAATCCTCCGCCTCGTTATCATTGGCTTCTTTCTCCATTATCGACTTCGTCATCCGGTCAAGGATGCATATAGCTTGTGGTTGACATCTGTCATTTGTGAAATTTGGTTTGCCGTTTCGTGGATTTTAGATCAGTTCCCTAAATGGTACCCAATTGAACGTGAAACGTATCTGGATCGCCTATCACTTCGGTATGAAAAAGAAGGGAAGCCTTCGGAGTTATCCTGTGTAGACATCTTCGTGAGTACAGTTGATCCCATGAAAGAACCTCCATTGATTACTGCAAACACTGTTCTTTCCATCTTGGCCGTCGATTATCCGGTCGAGAAAGTTGCATGCTATGTCTCGGACGATGGAGCTGCAATGTTAACGTTTGAAGCTCTTTCTGAGACGTCAGGGTTTGCTAGGAAGTGGGTCCCGTTTTGCAAAAAGTTCAATATCGAGCCCCGGGCCCCGGAGTGGTATTTTGGTCAGAAGATTGATTACTTGAAAAACAAAGTTCATCCAACATTTGTGAAGGAAAGGAGGGCAATGAAGAGGGAATACGAAGAATTTAAGGTCAAAATAAATGGACTTGTAGCGACGGCACAAAAAGTCCCCGAGGATGGCTGGACGATGCAAGATGGAACTCCATGGCCGGGGAACCTTGTCCGGGACCATCCCGGCATGATTCAGGTCTTTCTTGGCGATAATGGTGTTCATGATTGCGAAGGAAACGAGTTACCTCGTTTGGTTTATGTTTCTCGTGAAAAGAGACCAGGGTTTGAACACCATAAAAAGGCTGGGGCTATGAACGCTTTGGTACGAGTTTCGGCTGTTCTGTCAAACTCCCCATATATTCTGAATGTCGACTGTGATCATTACATCAATAACAGCAAGGCACTTAGAGAAGCAATGTGTTTCATGATGGACCCTCAGGCGGGGAAGAAAGTTTGCTATGTGCAGTTTCCTCAAAGGTTTGATGGGATCGATCGACATGATAGATACTCGAATCGAAATGTTGTTTTTTTCGATATCAACATGAAAGGATTAGATGGCATACAAGGGCCGATTTACGTTGGAACTGGGTGTGTATTTCGAAGGCAAGCACTATACGGATATGATGCTCCGGTCAAAAAGAAGCCTCCGAGCAAAACATGTAATTGTTTGCCTAAATGGTGCTGCCTTTGCTGTGGCTCGAGAAAGAACAGGAAGGGAAGAGGTAAAAATGAGACAAAGAAGAAAACGAAGCATAGAGAAGCATCGAAGCAAATACATGCCATTGAAAATATCGAAGAGCGAATTGAAGAATCTAATGCAAAAACATCTTCGGAGACTACCCAAATGAAATTAGAGAAGAAGTTCGGGCAATCTCCGGTTTTTGCTGTTTCGACAATATTGGAAACCGGTGGAGTTCCTCACGATATCAGTCCGGCATCGCTCTTGAGAGAAGCCATTCAAGTGATTAGTTGTGGATATGAAGATAAAACAGAATGGGGAAAAGAGGTCGGCTGGATTTATGGGTCGGTGACAGAAGATATTCTGACGGGATTTAAGATGCACTGCCATGGATGGCGATCTGTGTATTGCATACCTCGTCGACCCGCTTTCAAAGGGTCGGCTCCTATTAACCTCTCGGATCGATTACACCAAGTTCTTCGGTGGGCCCTTGGCTCTGTCGAGATTTTCTTGAGTAAGCACTGTCCAATTTGGTATGGCTATGGTGGTGGTTTAAAATGGTTGGAGCGATTCTCGTATATTAACTCAGTAGTATATCCGTTGACCTCTATCCCCTTGCTCGTCTATTGTAGCCTTCCGGCCATTTGTCTCCTAACCGGAAAGTTTATCGTTCCGGAGATTAGCAACTATGCAAGTCTAATCTTCATAGCACTCTTCATATCCATAGCTGCAACTGGAATCCTCGAAATGCAATGGGGTGGCGTCGGAATTGACGACTGGTGGAGAAATGAGCAGTTTTGGGTAATCGGTGGTGTTTCTTCTCATCTCTTTGCTTTATTTCAAGGCTTCCTCAAAGTTTTGGCCGGAGTTAGCACGAATTTCACCGTCACGTCCAAAGCGGCTGATGACGGGGAATTCTCGGAACTCTACATTTTCAAATGGACATCTCTTTTGATCCCCCCGACAACATTGCTCATCATAAACATAGTGGGCGTGGTGGTCGGAATCTCGAATGCCATCAACAACGGGTACGATTCTTGGGGCCCACTTTTCGGAAGACTGTTCTTTGCATTCTGGGTTATAATCCACCTCTATCCCTTCCTGAAGGGGTTATTAGGTAAACAAGATAGATTGCCCACAATTATTGTGGTCTGGTCAATATTACTGGCCTCAATTTTGACTCTTCTGTGGGTGAGGATCAATCCATTTGTGTCAAGAGATGGCCCTGTTTTAGAAATTTGTGGATTGAACTGTGATTAG 3273 44.58 MDTGGRLIAGSHNRNEFVLINAEENGRIKSVKELSGQVCHICGDEIEITFDGDPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGDEEEDDIDDLDNEFDYGNLDGVGSTEAAMLGSRYNTVRSSSGIPIHVENKSSSVPTEIPLLTYGEEDSDISSDRHALIVPPFMDHRNKVHHMPSSDPSTSLQTRPMVPKKDIAVYGYGSVAWKDRMDEWKRRQNEKLQVMKHHDSGGKYDENDLDDADIPMMDEGRQPLSRKLPISSSKINPYRLIIILRLVIIGFFLHYRLRHPVKDAYSLWLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELSCVDIFVSTVDPMKEPPLITANTVLSILAVDYPVEKVACYVSDDGAAMLTFEALSETSGFARKWVPFCKKFNIEPRAPEWYFGQKIDYLKNKVHPTFVKERRAMKREYEEFKVKINGLVATAQKVPEDGWTMQDGTPWPGNLVRDHPGMIQVFLGDNGVHDCEGNELPRLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNSPYILNVDCDHYINNSKALREAMCFMMDPQAGKKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPSKTCNCLPKWCCLCCGSRKNRKGRGKNETKKKTKHREASKQIHAIENIEERIEESNAKTSSETTQMKLEKKFGQSPVFAVSTILETGGVPHDISPASLLREAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPRRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSKHCPIWYGYGGGLKWLERFSYINSVVYPLTSIPLLVYCSLPAICLLTGKFIVPEISNYASLIFIALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGFLKVLAGVSTNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLIINIVGVVVGISNAINNGYDSWGPLFGRLFFAFWVIIHLYPFLKGLLGKQDRLPTIIVVWSILLASILTLLWVRINPFVSRDGPVLEICGLNCD 1090
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27321590 27326681 + Bma023414.1 Bma06g00533 84035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00533 1090 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Bma06g00533 1090 Pfam Cellulose synthase 362 1078 IPR005150 GO:0016020|GO:0016760|GO:0030244
Bma06g00533 1090 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Bma06g00533 1090 SUPERFAMILY Nucleotide-diphospho-sugar transferases 510 909 IPR029044 -
Bma06g00533 1090 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1089 - -
Bma06g00533 1090 Coils Coil 699 726 - -
Bma06g00533 1090 MobiDBLite consensus disorder prediction 681 700 - -
Bma06g00533 1090 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Bma06g00533 1090 SUPERFAMILY RING/U-box 24 111 - -
Bma06g00533 1090 Pfam Zinc-binding RING-finger 29 105 IPR027934 -
Bma06g00533 1090 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 504 654 IPR029044 -
Bma06g00533 1090 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 9 [UDP-FORMING]-RELATED 1 1089 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g01040 Bma06g00533 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02511 Bma-Chr1:82789972 Bma06g00533 Bma-Chr6:27321590 2.36E-61 dispersed
Bma04g00380 Bma-Chr4:3031270 Bma06g00533 Bma-Chr6:27321590 6.26E-50 dispersed
Bma05g01323 Bma-Chr5:52786012 Bma06g00533 Bma-Chr6:27321590 8.71E-24 dispersed
Bma06g00533 Bma-Chr6:27321590 Bma06g00955 Bma-Chr6:45847014 0 dispersed
Bma14g00062 Bma-Chr14:777369 Bma06g00533 Bma-Chr6:27321590 0 dispersed
Bma04g00063 Bma-Chr4:561763 Bma06g00533 Bma-Chr6:27321590 0 transposed
Bma03g01040 Bma-Chr3:12145522 Bma06g00533 Bma-Chr6:27321590 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00533 K10999 - rcu:8273696 1951.41