Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00574 ATGGATATCATTGAGGTTGAAGAAAATTTGTTTGCAGTCAGCGATGCCAAGCTACATGGACAGATGTGCAAGATACTGTCTGCAATGTATTGCAAAGTATTGTCTATTTTCCCATCTTTAGAAGCAGCGAAGCCGGGAAGTAAGTCAGGCATTCAAGCATTATGCTCATTGCATGTGGCAATGGACAAGACAAAAAATATTCTTCAACATTGCTCAGAATGTAGCAAACTCTACTTGGCTATAACCCGAGAGTCTGTCCTGTCGAAATTTGAGAAAGCAAGATTTTGTCTCGCAGACAGTCTCAAACGGGTCGAAGATAATGTTCCACAGTCTGTTGGCTTTCAGATACAAGAGATAATTTGTGAACTTGAGAGCATTGAGTTTTCTCTTGATCCATTGGAGAAGCAAGTCGGCGATGATTTGATAATACTACTTCAACAAGAGCGAAAAGTTAGCGACTCCATTGACAATAACGAGTTTGAATCTTTTCATCAAGCTGCATTGAGACTTGGAATAATCTCTTCTAGAACAGCCCTTACAGAGAGAAGAGCCTTAAAGAAACTCGTCGAAAAAGCTCGCACTGAAGAAGACAAGCGGAAAGAATCTATCGTGGCTTACCTTTTGCATCTCATGAGGAAATACTCAAAAGTTTTTCGGAACGAGATTTCCGATGAAAACGACTCACCAGGTTCTACGCCGTGTTCACCTGAGGAAATCAGTCCTGGTTGTATCAATCAAACCTTTGAAAAGCAACTATTGAAGCATAGTTCAATTAATTTCAAGCCCGGAAATAAGAAATCAGGGCAGATGACCATCCCACCTGAAGAACTAAGGTGTCCAATATCATTGCACCTCATGTATGACCCTGTAATTATAGCTTCTGGCCAAACATACGATAGAAGTTGTATTGAGAAATGGTTTAATGATGGTCATAGCTCCTGTCCAAAGACTCAACAGAAGCTCTCTCATCTTTCTCTGACCCCTAATTACTGCGTTAAGAGCCTCATTGCTAGTTGGTGCGAGAAAAATGGAGTTCCTCTTCCGGATGCCCCACCAGAGAGTCCAGATCTTAACTATTGGAGGCCTGCATTATCTGAATGTGAGTCCGTTAGTTCAAGATCTATGGACAGCCTTGGCTCTTGCAAACTGAAGGGAGTCAAGGTTGTTCCATTAGAGGAGAGTTGTATCATTGCAGAGACTGAAGGAATCGCATTAGATCGTTTATCTGCAGAGAAGAAAGAGTCGGATTTGAATATATTTGATAAATTCGAGTATTTCCTGATGGTTTTGAACGAAGGAGAAGACTTAAAGAAAAAGTGTGAGGTGGTTGAACAGATAAGGTTCTTGCTGAAGGATGATGAGGAGGCCAGGATGGTTATGGGAGCTAAAGGGTTTGTTCAAACACTTCTTAAGTTTCTTCAACTAGCTGTAAAAGAAGGAAATTCAAAAGCTCAAGAAAGTGGAGCCATGGCACTCTTTAACCTGGCTGTCAACAATTGCAGAAACAAGGAAATAATGTTGAAAGCCGGGGTTATTTCATTGTTGGAGCAGATGATCTTGAACTCTGATTCCCACGAGTATGCGACAGCCCTCTATCTAAATCTTTCTTGCGTCGAAGACGCCAAGGCTATCATTGGTCTAAGCTGTGCTGTTCCTTTCTTGTGTCATCTTCTTCAAACTAACGCCAAACCCATCTGCAAGCTTGATGCTCTCCATGCCCTTTACAATCTTTCTACTCTGCCCTCCAACATTTCTAACCTCCTTTCTGCTGGAGTCATAACTGGCCTTCAATCCCTACTTGCAGACCCTGGTGATCATGGATGGACCGAGAGAGCCATAGCAGTCTTGATACATTTGGCGTTAACCCAATCGGGAAAAGACAAAATGAGATCTGCCTCAGGCCTGATTAGTGCATTGGCAAGAATTGTGGACAGTCGTGAAGGTATAGAGCAGGAGCAATCTGTCTCATGTCTCTTGATCTTGTGTGATGGCAATGAAAGCTGCAGCCAAATGGTCCTGCAAGAAGGGGTGATTCCAGGATTGGTGTCAATGTCTGTCAATGGGACGGCCAGAGGGAGGGAGAAGGCTCAAAAACTTTTGATGTTGTTCCGGGAGCAAAGGCAGCGAGAGCAACCGCCCATGGAATGGGGCGAGAGTGGTGGAAGTTTCATTTCGCCCTCACAAACGAAGCCGCTCTGCAAATCGACGTCAAGAAGAAGAATGGGGAAAGCTTTGAGCTTTTTGTGGAAGAGTAAAAGTCATTCAGTTAACCAGTGGTGA 2280 43.25 MDIIEVEENLFAVSDAKLHGQMCKILSAMYCKVLSIFPSLEAAKPGSKSGIQALCSLHVAMDKTKNILQHCSECSKLYLAITRESVLSKFEKARFCLADSLKRVEDNVPQSVGFQIQEIICELESIEFSLDPLEKQVGDDLIILLQQERKVSDSIDNNEFESFHQAALRLGIISSRTALTERRALKKLVEKARTEEDKRKESIVAYLLHLMRKYSKVFRNEISDENDSPGSTPCSPEEISPGCINQTFEKQLLKHSSINFKPGNKKSGQMTIPPEELRCPISLHLMYDPVIIASGQTYDRSCIEKWFNDGHSSCPKTQQKLSHLSLTPNYCVKSLIASWCEKNGVPLPDAPPESPDLNYWRPALSECESVSSRSMDSLGSCKLKGVKVVPLEESCIIAETEGIALDRLSAEKKESDLNIFDKFEYFLMVLNEGEDLKKKCEVVEQIRFLLKDDEEARMVMGAKGFVQTLLKFLQLAVKEGNSKAQESGAMALFNLAVNNCRNKEIMLKAGVISLLEQMILNSDSHEYATALYLNLSCVEDAKAIIGLSCAVPFLCHLLQTNAKPICKLDALHALYNLSTLPSNISNLLSAGVITGLQSLLADPGDHGWTERAIAVLIHLALTQSGKDKMRSASGLISALARIVDSREGIEQEQSVSCLLILCDGNESCSQMVLQEGVIPGLVSMSVNGTARGREKAQKLLMLFREQRQREQPPMEWGESGGSFISPSQTKPLCKSTSRRRMGKALSFLWKSKSHSVNQW 759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30839405 30842668 - Bma023489.1 Bma06g00574 84076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00574 759 Pfam U-box domain 274 343 IPR003613 GO:0004842|GO:0016567
Bma06g00574 759 SMART arm_5 453 497 IPR000225 GO:0005515
Bma06g00574 759 SMART arm_5 498 537 IPR000225 GO:0005515
Bma06g00574 759 SMART arm_5 538 579 IPR000225 GO:0005515
Bma06g00574 759 MobiDBLite consensus disorder prediction 721 735 - -
Bma06g00574 759 Gene3D - 410 712 IPR011989 -
Bma06g00574 759 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 346 IPR013083 -
Bma06g00574 759 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
Bma06g00574 759 SUPERFAMILY RING/U-box 268 349 - -
Bma06g00574 759 PANTHER U BOX DOMAIN-CONTAINING 1 712 - -
Bma06g00574 759 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Bma06g00574 759 SUPERFAMILY ARM repeat 419 698 IPR016024 -
Bma06g00574 759 CDD RING-Ubox_PUB 277 319 IPR045210 -
Bma06g00574 759 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 712 - -
Bma06g00574 759 MobiDBLite consensus disorder prediction 710 736 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma06g00574 Bma15g00238 CCT
Bma01g00018 Bma06g00574 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02326 Bma-Chr1:80762076 Bma06g00574 Bma-Chr6:30839405 2.20E-53 dispersed
Bma06g00119 Bma-Chr6:1626872 Bma06g00574 Bma-Chr6:30839405 2.75E-88 dispersed
Bma06g00574 Bma-Chr6:30839405 Bma14g00501 Bma-Chr14:5627796 3.33E-07 dispersed
Bma07g00845 Bma-Chr7:28464776 Bma06g00574 Bma-Chr6:30839405 1.14E-15 dispersed
Bma02g00011 Bma-Chr2:233948 Bma06g00574 Bma-Chr6:30839405 1.36E-24 transposed
Bma01g00018 Bma-Chr1:310878 Bma06g00574 Bma-Chr6:30839405 0 wgd
Bma15g00238 Bma-Chr15:2376515 Bma06g00574 Bma-Chr6:30839405 4.10E-74 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00574 - - qsu:112018265 1056.2