Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00580 ATGCCACCCGCTTATTTTCCTCTCCGGTGGGAGAGCACCGGGGACCAGTGGTGGTACGCCTCGCCTATTGATTGGGCTGTTGCCAATGGCCTGTACGACGTTGTCAGGGAGCTTCTCCACCTCGACTCAAATCTCCTCATCAAGCTCACTTCCCTCCGGCGAATTCGCCGCCTTGAAACCGTGTGGGACGACGAAGCTCAGTTTGCTGATGTGGCCGAGTGCCGCTCCAGGGTTGCCAAAAAACTTTTCCTCGAAGCGGAATTGAACAACGGTGAGAACACTCTCATTCGAGCCGGTTATGGCGGTTGGCTTCTCTACACAGCCGCCTCCGCCGGAGACCTGGGTTTTGTCATTGATTTGTTGCAGAGAGATGCTCTGCTTGTTTTCGGAGAAGGGGAATTCGGGGTCACTGACATACTTTACGCTGCAGCCAGAGGGAAAAACTCCGAGGTTTTCAAACTCCTGCTCCATTACGCAATTTCACCGAGATGCTATTTTAGCTCCGGCTCGGAAATAGAGAAGCAGTTGCCGGAAAGAGAAACTCGTTCAACTTTCGGGTGGGAGGTGATGAACAGGGCCGTTCATGCGTCGGCCAGAGGAGGGAATTTAGGGATTTTAAAGAACCTTCTTGGGGATGAGCCTGATATTCTGGTTTACAGAGACGCCCATGGCTCCACCATCTTGCATTCAGCCGCCGGTCGAGGACAGGTCGAGGTGAGACAATCATTTGACATCATCTTCTCCACAGATAATCAAGGAAATACAGCTTTACACGTTGCTGCTTACAGGGGCTACTTATCTGTGGTGGAGCTGCTGAGTCAAACTTCTCCCTCTCTGAAGGCTTCAACCAACAACGTCGGAGACACTTTTCTTCACATGGCGGTCGCCGGATTCAGAGCCCCTGGTTTCCGACGATTAGACAAGCAAATCGAGCTGGTCAAGCAGTTAATCGGTGGGAATTTCCTGGATATGGAGGCGATCATCAATGTCAGGAACAACAAAGGAAGAACTGCTCTTCATATGGCAGTGGGCGAGAATTTCAACAGCGATCTCGTTGAACTCCTGATCTCTGTCGGACGGATTAATTTGAACATCCGCGATGCCGATGGGATGACCCCTCTTGATCTTCTCAAGCATCGTCCTCGAACAGCTTCTTCTGAGGTATTGATCAAGCAAATGATATCGGCCGGAGGAATTGCCAACCAGCTCTATCATGTGGCGAGGAGGGCCCTCGTCTCTCAGTTGAAAATGCATGGCGGTGGGAGCAGTCCTGGAAGTTGTTTTGGAGTTTTTGATGGAGAGATACTCTTATATACCTCCATAGACGGCATAGGTGATGAAGTAGATGAATGTGAAATGAGTGGGTGTGAGATAAGCGAGATAGATTCTCCAAACTTGGCAGAGAAGAAGAAACGAGCGCGCAGGCTAAAGTTTCTTCTCGACAGGGCCAGGAAGAACGGGCGGAGACTTGGCGGCGCAGAAAGTGGAGATGACTTGGAAATGGCCCAGTCCAGTGGGGGAACTTCTCTTAGGCAGAGATACTCAAAAAGTTTAAGCCTTGCCAACAGTAAAAGGGTATTTTCATTCGCACATAATAGTCCGAGCCCGTCGACAAAAGAGAAGTTCACCATTGGACTTATGCAGGGTGTTACTCAGACAATGCCGCCTTTACCCATTGCGACTCCATCGACTTCTTCTCCAAAGGGTGCAAAAATTGGCATAGACAAAGGCTCTAGCTCCGAGGCCAAAGGGCGAGGTTTGGTAAATAGTAAGTTGATGAACAAGTACTTGAGTCTTGGAGCTCAGGGGGTGGCGGTGGACGAGTCGATCAGATGTAAGAGGCTCGATCAAAATGACCAGCAATTTTCGTCTTTAGTTGCTTGA 1884 50.11 MPPAYFPLRWESTGDQWWYASPIDWAVANGLYDVVRELLHLDSNLLIKLTSLRRIRRLETVWDDEAQFADVAECRSRVAKKLFLEAELNNGENTLIRAGYGGWLLYTAASAGDLGFVIDLLQRDALLVFGEGEFGVTDILYAAARGKNSEVFKLLLHYAISPRCYFSSGSEIEKQLPERETRSTFGWEVMNRAVHASARGGNLGILKNLLGDEPDILVYRDAHGSTILHSAAGRGQVEVRQSFDIIFSTDNQGNTALHVAAYRGYLSVVELLSQTSPSLKASTNNVGDTFLHMAVAGFRAPGFRRLDKQIELVKQLIGGNFLDMEAIINVRNNKGRTALHMAVGENFNSDLVELLISVGRINLNIRDADGMTPLDLLKHRPRTASSEVLIKQMISAGGIANQLYHVARRALVSQLKMHGGGSSPGSCFGVFDGEILLYTSIDGIGDEVDECEMSGCEISEIDSPNLAEKKKRARRLKFLLDRARKNGRRLGGAESGDDLEMAQSSGGTSLRQRYSKSLSLANSKRVFSFAHNSPSPSTKEKFTIGLMQGVTQTMPPLPIATPSTSSPKGAKIGIDKGSSSEAKGRGLVNSKLMNKYLSLGAQGVAVDESIRCKRLDQNDQQFSSLVA 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31154354 31156337 - Bma023504.3 Bma06g00580 84082

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00580 627 Pfam Ankyrin repeats (many copies) 225 272 IPR002110 GO:0005515
Bma06g00580 627 Gene3D - 190 398 IPR036770 -
Bma06g00580 627 ProSiteProfiles Ankyrin repeat region circular profile. 334 359 - -
Bma06g00580 627 ProSiteProfiles Ankyrin repeat profile. 334 359 IPR002110 GO:0005515
Bma06g00580 627 ProSiteProfiles Ankyrin repeat profile. 252 284 IPR002110 GO:0005515
Bma06g00580 627 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 1 567 - -
Bma06g00580 627 MobiDBLite consensus disorder prediction 489 510 - -
Bma06g00580 627 ProSiteProfiles Ankyrin repeat region circular profile. 252 272 - -
Bma06g00580 627 SMART ANK_2a 286 326 IPR002110 GO:0005515
Bma06g00580 627 SMART ANK_2a 18 47 IPR002110 GO:0005515
Bma06g00580 627 SMART ANK_2a 369 402 IPR002110 GO:0005515
Bma06g00580 627 SMART ANK_2a 252 281 IPR002110 GO:0005515
Bma06g00580 627 SMART ANK_2a 334 365 IPR002110 GO:0005515
Bma06g00580 627 SMART ANK_2a 189 218 IPR002110 GO:0005515
Bma06g00580 627 SMART ANK_2a 100 129 IPR002110 GO:0005515
Bma06g00580 627 SMART ANK_2a 134 164 IPR002110 GO:0005515
Bma06g00580 627 MobiDBLite consensus disorder prediction 559 581 - -
Bma06g00580 627 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 1 567 - -
Bma06g00580 627 Coils Coil 466 486 - -
Bma06g00580 627 Gene3D - 13 167 IPR036770 -
Bma06g00580 627 Pfam Ankyrin repeats (many copies) 328 376 IPR002110 GO:0005515
Bma06g00580 627 SUPERFAMILY Ankyrin repeat 104 390 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00580 - - - jre:109019470 707.597
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00580 Bma-Chr6:31154354 Bma14g01360 Bma-Chr14:25316181 0 dispersed
Bma06g00580 Bma-Chr6:31154354 Bma14g00991 Bma-Chr14:11550548 8.43E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1145 Blo01g00371 Blo16g01188 Bda01g02190 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0728 . . . . . . . . . . . . Bma06g00580 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009176 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00580 Bma_Chr06 FPKM 34.590771 38.546108 1.113295 1.703448 72.692841 73.262283 77.238762 0.109859 0.0 0.0