Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00581 TTTCCCAGAAGTCACGGTCGTTCTGGTTTCTGGATACTACAGGTATATCCTCTGTTTGCGGCAGTCGGCGTGGCAGTCGGCATCTGCGGCATGCAACTTGTAAGAAACATCACCTCCAACCCAGAAGTCAGGGTTTTGAAGGAGAAGAGAGCTGCAGGGATACTTGACAACTTTGAAGAGGGAGAGAAGTACGCACAGCATGCCGTGAGGAAGTTCGTCCGCAACAAATCCTCCCAGATCATGCCATCCATCAACAGTTTCTTCTCAGATCCTAATTAA 279 49.1 FPRSHGRSGFWILQVYPLFAAVGVAVGICGMQLVRNITSNPEVRVLKEKRAAGILDNFEEGEKYAQHAVRKFVRNKSSQIMPSINSFFSDPN 92
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31157169 31157520 + Bma023505.1 Bma06g00581 84083

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00581 92 PANTHER G-BOX BINDING PROTEIN 14 91 - -
Bma06g00581 92 Pfam NADH-ubiquinone reductase complex 1 MLRQ subunit 14 78 IPR010530 -
Bma06g00581 92 PANTHER OS07G0274700 PROTEIN 14 91 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00581 - - - mnt:21410194 142.895
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00801 Bma-Chr3:7415036 Bma06g00581 Bma-Chr6:31157169 6.81E-33 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1142 . Blo16g01187 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone11ag0354 . . . . . . . . . . . . . . Bma06g00581 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001710 2 3 1 3 2 2 1 1 2 3 1 1 3 3 2 2 1 3 4 2 3 3 2 0 2 2 3 4 3 2 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00581 Bma_Chr06 FPKM 23.143835 25.836626 26.338108 27.268944 25.257538 23.382391 27.282156 31.522137 31.708437 33.854809