Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00592 ATGGATCGACCCCCTGCTTTACACCCAATTGCTGCTCATTTAGCAACTTCTGTGCTGCCGTTTCGACGGAGTCAACGGCATTGCTACGGAGAGTCAGTTCCTGGGGAATTTCGTTTGGCTGCATATCCCGACATTCTCCTGCATATGCTTTCTTCTTGTAATTTGAACTCGCGTGATCTTGCAATATTAGAGGCAACATGTTCCTTCTTCAAGCAGCCTGCAAATTTCCACCCTGATTTCCAGCTATCCATTTCAGAGCTTGCTGCTTTCGATATGTGCAGAAAGAGGGCTATATTTAAGCCGATGACTATGGAAGAGCAAAAGCATTTGACGCAAAGATGTGGAGGTTCATGGAAACTGGTATTAAGGTTCCTGATGGCTGGAGAAGCATGTTGCCGGAGGGAGACATCTCAGGCCGTAGCTGGACCAGGTCATAGTATAGCCGTTTCTTCAAAAGGCATCGCTTATACTTTCGGGTCTAACAACTTAGGACAGCTAGGACATGGCACCATCGAAGAAGAATGGCGGCCTCGACCAATCAGATCTCTGCAAGGGATTCGAATTATCCACGCAACAGCAGGGATGGGGAGGACGATGCTAATCAGCGATGTTGGCAAGGTATATGCCACTGGGGACTGCTTTGTTGAGGCTGATTACGAGCTTGAAAGGTCTAAAATGGCTTCTACTCCAGTGCTGGTTGATGCTTTAAAGAACATTTTTGTGGTGCAAGCTGCAATTGGAAACTTCTTCACTGCTGTGTTGTCAAGAGAAGGGACAGTTTACACATTTTGTTGGGGCAGTGAGGCAAAACTAGGCCACCAAACTGATCCGGTCGATATCGAGCCTCGTCCTTTGTTGGGAGCTCTTGAAAACATACCAGTTGTTCAAATAGCAGCTGGATATTGCTTTCTTCTTGCTCTGGCATTTCAACCGGCCGGCATGTCAGTTTATTCTGTGGGGTGTGGCTTGGGAGGGAAGCTAGGCCATGGTTCGATAAGCGACGAGAAGCAACCAAGGCTGATCGAACAGTTTGGGGCTTTGAAGCTTCAGCCCGTGGCAGTTGCAGCCGGTGCTTTTCATGCAGCCGTGGTGGGGCATGACGGTCGAGTCTGCACGTGGGGGTGGGGGCGTAACGGGTGCTTGGGCCATGGAAACGAAGAATGTGAATCACGTCCTAAGGTGATCGAGTCGTTGACACATGTCAAAGCCGTCCATGTCGCAACTGGCGATTACACAACTTTTGTCGTAGCCGATGATGGCGATGCATACTCTTTCGGGTGCGGAGAATCTGCTAATCTCGGTCATGAAAACACTGCTGATGGACAGGAAAACAGGTATGCACATGTGTTAACCCCAAAGCTTGTTGAATCATTGAAGGGAGGGAAGGAGAGGGTTGTGCAGATAAGCCTCACTAATTCCGTTCCCCATAACGCGCACACATTGGCACTGACTGAGTCAGGGAAGCTCTACGCTTTTGGAGCCGGAGACGAAGGGCAGCTCGGGTCTAACCAAACCCAAAGTGGGAGACCAGTACTTGTTGATATTGATCTAAGCTAG 1557 49.26 MDRPPALHPIAAHLATSVLPFRRSQRHCYGESVPGEFRLAAYPDILLHMLSSCNLNSRDLAILEATCSFFKQPANFHPDFQLSISELAAFDMCRKRAIFKPMTMEEQKHLTQRCGGSWKLVLRFLMAGEACCRRETSQAVAGPGHSIAVSSKGIAYTFGSNNLGQLGHGTIEEEWRPRPIRSLQGIRIIHATAGMGRTMLISDVGKVYATGDCFVEADYELERSKMASTPVLVDALKNIFVVQAAIGNFFTAVLSREGTVYTFCWGSEAKLGHQTDPVDIEPRPLLGALENIPVVQIAAGYCFLLALAFQPAGMSVYSVGCGLGGKLGHGSISDEKQPRLIEQFGALKLQPVAVAAGAFHAAVVGHDGRVCTWGWGRNGCLGHGNEECESRPKVIESLTHVKAVHVATGDYTTFVVADDGDAYSFGCGESANLGHENTADGQENRYAHVLTPKLVESLKGGKERVVQISLTNSVPHNAHTLALTESGKLYAFGAGDEGQLGSNQTQSGRPVLVDIDLS 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31680517 31682687 + Bma023519.2 Bma06g00592 84094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00592 518 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 258 310 IPR000408 -
Bma06g00592 518 SUPERFAMILY RCC1/BLIP-II 447 512 IPR009091 -
Bma06g00592 518 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 354 364 IPR000408 -
Bma06g00592 518 Pfam Regulator of chromosome condensation (RCC1) repeat 367 416 IPR000408 -
Bma06g00592 518 Pfam Regulator of chromosome condensation (RCC1) repeat 153 200 IPR000408 -
Bma06g00592 518 Pfam Regulator of chromosome condensation (RCC1) repeat 316 364 IPR000408 -
Bma06g00592 518 Pfam Regulator of chromosome condensation (RCC1) repeat 419 469 IPR000408 -
Bma06g00592 518 SUPERFAMILY RCC1/BLIP-II 136 440 IPR009091 -
Bma06g00592 518 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 314 367 IPR000408 -
Bma06g00592 518 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 8 518 - -
Bma06g00592 518 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 368 419 IPR000408 -
Bma06g00592 518 Gene3D - 310 517 IPR009091 -
Bma06g00592 518 Gene3D - 128 309 IPR009091 -
Bma06g00592 518 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 153 204 IPR000408 -
Bma06g00592 518 PRINTS Chromosome condensation regulator RCC1 signature 136 149 IPR000408 -
Bma06g00592 518 PRINTS Chromosome condensation regulator RCC1 signature 155 171 IPR000408 -
Bma06g00592 518 PRINTS Chromosome condensation regulator RCC1 signature 415 436 IPR000408 -
Bma06g00592 518 PRINTS Chromosome condensation regulator RCC1 signature 357 375 IPR000408 -
Bma06g00592 518 PRINTS Chromosome condensation regulator RCC1 signature 244 260 IPR000408 -
Bma06g00592 518 PRINTS Chromosome condensation regulator RCC1 signature 260 274 IPR000408 -
Bma06g00592 518 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 487 518 IPR000408 -
Bma06g00592 518 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 420 486 IPR000408 -
Bma06g00592 518 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 8 518 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00592 - - - jre:108990808 773.467
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma06g00592 Bma14g01836 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00592 Bma-Chr6:31680517 Bma07g01167 Bma-Chr7:46184146 5.95E-12 dispersed
Bma14g01599 Bma-Chr14:33175791 Bma06g00592 Bma-Chr6:31680517 7.68E-51 transposed
Bma14g01836 Bma-Chr14:39268801 Bma06g00592 Bma-Chr6:31680517 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g590 . Blo16g01178 . Bda11g01299 Bpe13g01493 . Bma14g01836 . . Cmo18g00716 . Cma18g00729 . Car18g00678 Sed06g1714 Cpe09g00559 Cpe01g01582 Bhi07g01841 Tan04g0127 Cmetu10g0484 Lac13g0111 Hepe10g1560 . . Cla05g02623 Cam05g2811 Cec05g2847 Cco05g2878 Clacu05g2815 Cmu05g2663 Cre05g2779 Cone13ag1098 . . . Lsi04g00635 Csa05g02252 Chy10g00821 Cme10g00610 . Blo11g01031 Bda07g01651 Bda11g01299 . . . Bma06g00592 . . . Cma04g01795 . Car04g01809 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004026 2 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 4 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00592 Bma_Chr06 FPKM 4.938286 5.174692 5.615888 5.405462 8.947053 8.13818 8.353611 5.288446 5.597007 4.587746