Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00594 ATGTTCTTGTTTGATTTGCTAGGAGACTACAGATGGGAAGAAAAAGTGGTTTTAGCCCTCACAGCATTTGCAGTGAGCTATGGAGAATTTCGGCTGCTAATACAACTAAGTCTCAGTAACCCAATTGCAGCATCAATCACAATGCTCAAGCAGATGCCAAGAGATATAACTAAGTTTAAGCTTCAATTCAAGACTTTGACCATGGTGGTTAAATCTATGATGGATTTAGCAGAGTGTATCATCAAGTTTGAAGGCCAGCCATTTTCACAAGTAGAATTGGATTATGATATGAAATCCACTGCAAAAACTCATACCTATATAGCTGCTTACTGGGTTATGAGAAGCTGTCTGATATGCTATTCTCAGATCAAAGATTTGATGGGCTTCTTTTTCAGGAGTTATAATTTGACAGCAATTGCATCGTGGGAGCTCTCGAGTCTGGTAATTCGCCTTAGTAGAATATGCAAACAGCTGAACCAACAAGTTGAAATATGCGATCGGATGATGGAAACAAAATTACATCAGAAGTTGATAAATCTTTTCGAGCAAACACAAGCCGATGGCAATCAAGAGGTTCTTCGAATGTTGTTTGGTTTGAGCGAGGAGTTTCCGCTCCAAAAACACTCTTCGGAAGAAAAGCTGGAGATTTTGGAGCTGATAAACAAGGTGGTAATACTATTAATCTCAAAGCCAGACCTCCTTCCCAAAGAAAGAACACTCTTCATTGTTCAACAAACAACTGATCATCCTCACAGAGAAAGTTCAGAAGGAAGTTTTGAAGTTATATGGGTTTCTATTTCACTTTCTGATTCTTGGACTGATGCTGAAAAGATTCATACTCAACTTTTTTCCAAATCTTTGCCTTTCTACTCAATTCGGCAGCCATGGCTACTCAATGCCGCCACCGTTAAGTTCATAAAAGAAAAGTGGGAATTCGCAGACGAGCCGGTTATGGCTGTGTTGGATTCAAACGGGAGAGTCTCGAACTCGAATGCATTCGATATGGTGTCTATTTGGGGAGGCGGGGCATATCCCTTCTCAGTGTCAAGAGAAAAAGAGCTATGGTTTGAGCAGAACTGGACACTCCAACTTTTGATAAATGGCATTGACCCTCTACTTACCAAGTGGGCCGAAGAAGGTAGAATTGTTTGCATTTATGGAAGCTGCAGTCTGAAGTGGATTCGAGAATTCACCGACAGAATGAAAGAAATGGAGAAGGAAGGTGTGCAGATTGAGATTGTGTATGTTGGTGGGAGGAATCCAGTCCAAGATTTGAGGACCATTTTAGGCGTTGTTGATGCAGAAAAGATCAGCAGATCATTATCATTCACGAAAATATGCTTTTTCTGGATTAGATTGGAAAGCATAAGAAGATCAAAGCTCAGGCTCAACAATCCAAATGATCATATTCTAGAAAAGGTGTCGGAAATGCTGAATATCAGCGAAGAAAATGAGGACGGCTGGGCAGTGATAGGATCAGGCTCTTGCTCAGATATACTGAAGCTTCAGGGATCAAAGCAGATGGAATGCTTGAATTTGTTTCCCAAGTGGAAAGAAAATGTGGGAAAGTTTGGATTTTTAGGTGCCCTCAGGACTGCCATTAATCCTCCTCTTCTTTCAGGGCCCTGTGGCCACTCCAAGGTTGTTTCATACTGGTGA 1659 41.17 MFLFDLLGDYRWEEKVVLALTAFAVSYGEFRLLIQLSLSNPIAASITMLKQMPRDITKFKLQFKTLTMVVKSMMDLAECIIKFEGQPFSQVELDYDMKSTAKTHTYIAAYWVMRSCLICYSQIKDLMGFFFRSYNLTAIASWELSSLVIRLSRICKQLNQQVEICDRMMETKLHQKLINLFEQTQADGNQEVLRMLFGLSEEFPLQKHSSEEKLEILELINKVVILLISKPDLLPKERTLFIVQQTTDHPHRESSEGSFEVIWVSISLSDSWTDAEKIHTQLFSKSLPFYSIRQPWLLNAATVKFIKEKWEFADEPVMAVLDSNGRVSNSNAFDMVSIWGGGAYPFSVSREKELWFEQNWTLQLLINGIDPLLTKWAEEGRIVCIYGSCSLKWIREFTDRMKEMEKEGVQIEIVYVGGRNPVQDLRTILGVVDAEKISRSLSFTKICFFWIRLESIRRSKLRLNNPNDHILEKVSEMLNISEENEDGWAVIGSGSCSDILKLQGSKQMECLNLFPKWKENVGKFGFLGALRTAINPPLLSGPCGHSKVVSYW 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31689322 31691328 - Bma023521.1 Bma06g00594 84096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00594 552 Pfam Sieve element occlusion C-terminus 349 547 IPR027944 -
Bma06g00594 552 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 1 551 IPR039299 GO:0010088
Bma06g00594 552 Pfam Sieve element occlusion N-terminus 1 184 IPR027942 -
Bma06g00594 552 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION C 1 551 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00594 - - - pmum:103321927 590.882
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00594 Bma-Chr6:31689322 Bma13g00563 Bma-Chr13:12037182 2.41E-91 dispersed
Bma06g00593 Bma-Chr6:31685543 Bma06g00594 Bma-Chr6:31689322 2.58E-93 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g605 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma06g00594 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018063 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00594 Bma_Chr06 FPKM 4.912656 2.905253 6.930176 5.630853 4.166828 3.180712 3.556615 0.940595 0.841029 1.190045