Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00600 ATGACAGAGGATGCTGAGAAGGGAAACCTAATATCAAAGCTAGAAGTCTTCTTCAACACTTGTGTCCTCCATGGATGGAGAGACTCAGTTGTAACATTGCAGAGCACAAAATTCTTCCCAACTTGGTCCGAAGAAGTCGGAATTCCAGGAAAATGTATTGAAGCCATAGCTTCAAAAACCTTAGCCCATCCTTTAAAGAACAATGGAGCTTACAGCCATTGGTGGGCTGAAGATATAGCAGAATTGAGCATAGACCTTTATTGGAGAACGATGGTAGCCATTAAATCAAGTGGGAAGATACCTTCCAATCTCCTTGGAGAAGCGTTGAAAACTTATGTTTCAAAATGGCTGCCCAACCTATCAAAGAATGGACATGTTTCTGAATTGAACTCAGAAAAGGGGAAAGAGATCATCTCAAAAAACAGGCTTCTGTTGGAATCAATAATAAGTTTACTTCCTGCAGATAAAGGTGCAGTCTCTTGTAGTTTCTTGCTTAAATTGTTAAAAGTAGCCAATTTTGTCAACGCCTCTTCTTCTTCAAAGATGGAATTAGCCAAAAAGGCTGGACTTCAACTAGAAGAAGCAACACTTGGTGATTTGTTGATCCCTTCAGCATCGTCGTGTATCGATAAATCAAAATACGACGTCGACGCGGTGATGACGATGATGGAGTATTTTATGTCACAGGGGAAGAGTCCTCCGATGAGTCCTCTGAGATCAAAACTCCGGGTTCAAAGGAGGAGGTCTCGGTCTGCAGAGAATGCTGATTTTGAATTGCAGGAAAGTAGGAGATCTTCTTCGGCTTCGCATAGCTCTAAACTGAAGGTGGCAAAGCTTGTTGATCGTTATCTTCAAGAAATCGCCGGAGATGTGAGTTTGCCTGTCTCCAAGTTCACTGCCCTTGCTGGGTCTGTACCGGAATTCACCCGGCTTCATCACGATGACCTTTACAAAGCCATTGACACTTACCTCAAGGCGCATCCAGAACTGAGCAAGATGGAAAGGAAGCAATTATGCAAAATTCTCGACTGCAAAAGATTATCGGTCGAAGCAAGTATGCACGCTGCACAAAACGCGCTACTCCCATTGAGAGTGGTGGTTCAAGTTCTGTTCTTAGAACAAGCTAGATCAGCAATGGCGGGAGGTAAATTGACAGAACTGCCTGGCAGCATAAAAGCACTTCTAGCCAACGACAATCTAGCCCCATCAAGCGCGGCTGCCGCCACTGCGCCGGTGGAGAATCAGTGGAGCGTTTCTTGTTTAAAATCCCCAAATTTGAAGAGTCCCCTCTTTGGGGAAGAAGGTGGCAGCAAATGA 1317 44.34 MTEDAEKGNLISKLEVFFNTCVLHGWRDSVVTLQSTKFFPTWSEEVGIPGKCIEAIASKTLAHPLKNNGAYSHWWAEDIAELSIDLYWRTMVAIKSSGKIPSNLLGEALKTYVSKWLPNLSKNGHVSELNSEKGKEIISKNRLLLESIISLLPADKGAVSCSFLLKLLKVANFVNASSSSKMELAKKAGLQLEEATLGDLLIPSASSCIDKSKYDVDAVMTMMEYFMSQGKSPPMSPLRSKLRVQRRRSRSAENADFELQESRRSSSASHSSKLKVAKLVDRYLQEIAGDVSLPVSKFTALAGSVPEFTRLHHDDLYKAIDTYLKAHPELSKMERKQLCKILDCKRLSVEASMHAAQNALLPLRVVVQVLFLEQARSAMAGGKLTELPGSIKALLANDNLAPSSAAAATAPVENQWSVSCLKSPNLKSPLFGEEGGSK 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31976764 31978178 + Bma023531.1 Bma06g00600 84102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00600 438 Pfam NPH3 family 73 352 IPR027356 -
Bma06g00600 438 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 72 430 - -
Bma06g00600 438 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 1 73 - -
Bma06g00600 438 ProSiteProfiles NPH3 domain profile. 73 376 IPR027356 -
Bma06g00600 438 MobiDBLite consensus disorder prediction 229 264 - -
Bma06g00600 438 PANTHER OS12G0117600 PROTEIN 72 430 IPR043454 -
Bma06g00600 438 PANTHER OS12G0117600 PROTEIN 1 73 IPR043454 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00600 - - - cit:102615523 550.821
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma06g00600 Bma14g01820 CCT
Bma06g00600 Bma15g00219 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00600 Bma-Chr6:31976764 Bma02g00007 Bma-Chr2:191606 7.20E-97 dispersed
Bma14g01820 Bma-Chr14:39108691 Bma06g00600 Bma-Chr6:31976764 2.76E-176 wgd
Bma15g00219 Bma-Chr15:2167247 Bma06g00600 Bma-Chr6:31976764 1.27E-177 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g641 Blo01g00384 Blo16g01173 Bda01g02208 Bda11g01288 Bpe13g00508 . Bma14g01820 Bma15g00219 . Cmo18g00768 . Cma18g00763 . Car18g00698 . Cpe09g00533 Cpe01g01569 Bhi07g01792 . . . Hepe10g1591 . . Cla05g02588 Cam05g2777 Cec05g2813 Cco05g2849 Clacu05g2779 Cmu05g2629 Cre05g2743 Cone13ag1079 Cone19ag1066 . . Lsi04g00596 Csa05g02287 Chy10g00854 Cme10g00576 Blo06g00849 . Bda07g01637 Bda11g01288 . . . Bma06g00600 . . . Cma04g01771 . Car04g01796 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003072 5 1 3 3 4 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 2 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00600 Bma_Chr06 FPKM 4.138786 4.886007 0.629138 0.497792 12.943886 11.753984 13.452179 2.458158 1.964129 2.208194