Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00608 ATGGCTTCGGTTCAGCTCTGTTATCCGTCGTTGCGCACTGCACGTTTCCGGTGGACTCCGAGACTGGTTCAGAGCGCTAGCGAACGCCAGGCCCTTTTTGGTCGCATTGCTCCTGTCTATGACAATTTGAACGATGTCTTGAGCTTGGGTCAGCATCGAATATGGAAAAGAATGGCAGTAGCGTGGAGTGGGCAAGTAACAAAAAGGGGAGATTGCGTTTTGGATGTGTGCTGTGGAAGTGGAGATTTAGCGTTCCTTTTGTCTGAGAAAGTTGGTTCAGATGGCAAGGTGACAGGCCTTGATTTCTCAAAGGAGCAACTGGAGATTGCAGCCTCTCGTCAACATTCCCTTTTCAAATCCTTTGATAATATAGAGTGGGTCGAAGGAGACGCGATGAATTTGCCATTTCCTGATGACTCTTTTGATGCTATTTCCATGGGTTACGGGCTTAGAAACGTAATGGATAAACAGAAAGCCATGAAAGAGATGCTTAGAGTTTTGAAATATGGTGTTCTATTGGATTGTTTCCCTTTATGTATAAGACTGATGAGGCTGCAAATCCGGTCTCATTACTTTCATTTTTTTTTCTTCTGTTTTTCAGGTTCAAAAGAATGGATGATCAGTAATATTGTCGTCCCTGTTGCATCTGGTTATTGCCTTGCTCAGGAATATCAATATTTGGCCAAGTCGATCAAAGAATTTTTAACAGGTAAAGAATTGGAGAACCTTGCACTGGAAGCTGGATTTTCTGCTGCAGTTCATTACGAAATCAGCGGAGGCCTCATGGGTAATCTAGTAGCGACCAAGTAA 810 43.58 MASVQLCYPSLRTARFRWTPRLVQSASERQALFGRIAPVYDNLNDVLSLGQHRIWKRMAVAWSGQVTKRGDCVLDVCCGSGDLAFLLSEKVGSDGKVTGLDFSKEQLEIAASRQHSLFKSFDNIEWVEGDAMNLPFPDDSFDAISMGYGLRNVMDKQKAMKEMLRVLKYGVLLDCFPLCIRLMRLQIRSHYFHFFFFCFSGSKEWMISNIVVPVASGYCLAQEYQYLAKSIKEFLTGKELENLALEAGFSAAVHYEISGGLMGNLVATK 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32443702 32445558 - Bma023542.1 Bma06g00608 84110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00608 269 ProSitePatterns ubiE/COQ5 methyltransferase family signature 1. 40 55 IPR023576 GO:0008168
Bma06g00608 269 Gene3D Vaccinia Virus protein VP39 35 269 IPR029063 -
Bma06g00608 269 TIGRFAM MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 31 269 IPR004033 GO:0008168
Bma06g00608 269 Pfam ubiE/COQ5 methyltransferase family 30 267 IPR004033 GO:0008168
Bma06g00608 269 ProSiteProfiles UbiE family SAM-binding methyltransferase profile. 24 269 IPR004033 GO:0008168
Bma06g00608 269 PANTHER METHYLTRANSFERASE 17 269 - -
Bma06g00608 269 PANTHER 2-PHYTYL-1,4-BETA-NAPHTHOQUINONE METHYLTRANSFERASE, CHLOROPLASTIC 17 269 - -
Bma06g00608 269 Hamap 2-phytyl-1,4-naphtoquinone methyltransferase [menG]. 28 269 IPR032904 GO:0042372|GO:0052624
Bma06g00608 269 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 20 260 IPR029063 -
Bma06g00608 269 CDD AdoMet_MTases 73 179 - -
Bma06g00608 269 Hamap Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 23 269 IPR004033 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00608 K23095 MENG, menG; demethylphylloquinol methyltransferase [EC:2.1.1.329] - twl:120007078 320.087
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00608 Bma-Chr6:32443702 Bma06g01016 Bma-Chr6:46770177 2.20E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g652 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0678 . . . . . . . . . . . . Bma06g00608 . . . . Cma05g00031 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006920 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 3 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00608 Bma_Chr06 FPKM 7.022414 6.471611 3.84032 4.117151 2.379449 1.498378 2.614119 1.538016 2.347622 2.281671