Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00609 ATGGACGACTTATACGGCCTGCAATCAGGCGGGGAGTTCTCGGAGAAGGCGATGATTTCGCCTGAAAACCATATCCTACCTGTAAACTACCAGAACTTGTTCTCATACGGAGCCTTCCGCGACCGTTTTCCGATATTTGGATCCGATGAATTGCTCTCAACCGCTTCCGTCGTTTCTGAAGCTGAAGCTGCTTCTGTTATTCCAGAAATTCAACGGGAAGAAGACATGGTCAGCATGATAAAGGCCAAAATTGCCTCTCATCCCTGCTATCCTCGTTTGCTCGACACGTATATTGACTGCCAGAAGGTAGGGGCGCCGCCGGAGATTGCATCTTTGTTGGAAGAAATCCGACTAGAAAACGACTTTTATAAAAGAGACACAGTTTCAATGGGTTTCGGAGCTGATCCCGAGCTTGACAATTTCATGGTAACGTACTGTGACATCTTGGCCAAATATAAATCAGATCTTGCAAGGCCTTTCGATGAAGCAACAACATTCTTGAACAAGATTCAGTCACAGCTTAGTAGTCTCTCCACCGGTGCATCCGAGAGAAGCCCTTCCGGGGATGTCGCAGGATCTTCAGACGATGATAATTGCGGAAGAGAGCAGGGAGAGGAGCAAGAGGGTTTAAGGAGGGGAGAGGGAAATCATCTGAAAGACGTGCTGTTTCGCAAGTTTGGCAGACAGATCGGAAGCTTAAAAGTGGAATTCTCAAAGACGAAGAAAAAGGGAAAATTACCAAAAGAAGCTCGTCAAACACTGCTCGAATGGTGGAATGTTCACAACAAATGGCCATATCCCACAGAAGGTGATAAGATAGCACTGGCGGAGGCGACGGGGCTGGACCAGAAGCAAATCAATAACTGGTTCGTTAATCAACGGAAGCGCCACTGGAAGGCTTCTGAGAATATGCAGTTTGCTTTGTTGGATAATATGCCTCCGCCATTCTTTGGAGATTGA 960 46.88 MDDLYGLQSGGEFSEKAMISPENHILPVNYQNLFSYGAFRDRFPIFGSDELLSTASVVSEAEAASVIPEIQREEDMVSMIKAKIASHPCYPRLLDTYIDCQKVGAPPEIASLLEEIRLENDFYKRDTVSMGFGADPELDNFMVTYCDILAKYKSDLARPFDEATTFLNKIQSQLSSLSTGASERSPSGDVAGSSDDDNCGREQGEEQEGLRRGEGNHLKDVLFRKFGRQIGSLKVEFSKTKKKGKLPKEARQTLLEWWNVHNKWPYPTEGDKIALAEATGLDQKQINNWFVNQRKRHWKASENMQFALLDNMPPPFFGD 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32446915 32457931 - Bma023543.1 Bma06g00609 84111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00609 319 MobiDBLite consensus disorder prediction 177 213 - -
Bma06g00609 319 Pfam KNOX2 domain 133 177 IPR005541 GO:0003677|GO:0005634
Bma06g00609 319 Pfam Homeobox KN domain 257 296 IPR008422 GO:0003677|GO:0006355
Bma06g00609 319 SMART KNOX2_2 128 179 IPR005541 GO:0003677|GO:0005634
Bma06g00609 319 Gene3D - 235 307 - -
Bma06g00609 319 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 1 310 - -
Bma06g00609 319 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 310 - -
Bma06g00609 319 SMART ELK_2 217 238 IPR005539 GO:0003677
Bma06g00609 319 MobiDBLite consensus disorder prediction 177 192 - -
Bma06g00609 319 CDD homeodomain 249 299 IPR001356 GO:0003677
Bma06g00609 319 SMART HOX_1 239 304 IPR001356 GO:0003677
Bma06g00609 319 Pfam KNOX1 domain 80 120 IPR005540 GO:0003677|GO:0005634
Bma06g00609 319 MobiDBLite consensus disorder prediction 195 213 - -
Bma06g00609 319 SUPERFAMILY Homeodomain-like 239 314 IPR009057 -
Bma06g00609 319 ProSitePatterns 'Homeobox' domain signature. 275 298 IPR017970 GO:0000981|GO:0006355
Bma06g00609 319 ProSiteProfiles 'Homeobox' domain profile. 237 300 IPR001356 GO:0003677
Bma06g00609 319 SMART KNOX1_2 78 122 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00609 Bma-Chr6:32446915 Bma08g00095 Bma-Chr8:1177722 1.79E-112 dispersed
Bma14g01797 Bma-Chr14:38552455 Bma06g00609 Bma-Chr6:32446915 6.68E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57459 PF03791 KNOX2 9.90E-23 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00609 - - vri:117903949 421.009