Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00614 GCAGTACCAATCGGATCGAGTGTCGATCAAGTAAATTATTTTTGTAACAAGCAAATTAATCCAATGCTTTATCCGAACAAACGAAGCAGGGAAAGTGAAGATATCTCGAAGCAGAAGTTTCCGATTTTGTCAAATTACGAATTAGGCCATGACGATGCCAATCGTTTAGCAAGCATTAGAAATCAAAATCCGGTGTCAACCGGATTGAGACTGTCCTATGACGACGAAGAACACAACTCGTCTGTTACTTCTGCCAGTGGAAGTATGGCTGCTATACCTTCAATTATTTCATCTCACGGAGATGGTGTTATGGCAGAGCTTGATCGGCAAAAGGAAGAATTCGAAAAGTACATGAAAATTCAGGAGGAACACATGGCAAAGGGGGTGAGGGAGATGAAGCAAAGGCATCTAACCTCATTCCTAGCTGCATTGCAGAAAGGGGTAAGCAAGAAACTACAAGAGAAAGACTTGGAGATAGAAAACATAAACAGAAAAAACCGAGCACTGTTCGAGAAAATAAAGCAGGTGGCTTTAGAAGCACACAGCTGGCATAGCAAAGCCAAGTACAATGAATCGGTTGTAAACGTCCTCAAGAGCAACCTCCAGCAGGCAATCTCGCACGGAGCCGAGCAGGTGAGAGAAGGGTTTGGAGACAGCGAAGTAGACGACTCGGCCTCGCAGATCGACTCGAAAAATCTGGGTTTGAACTACGAGAGCCTGAAGGAGCAGATGATTTGCAGAGTTTGCAGGGAGAAGGAGGTTTCAACTATGTTGATTCCTTGCAGACATCTATGTTTGTGTAGTGATTGTGGAGGGTCAGTGGGTGTTTGTCCAGTTTGTCACTCTATCAAAACTTCTGGGATTGAAGTCTATTTATCCTGA 882 43.99 AVPIGSSVDQVNYFCNKQINPMLYPNKRSRESEDISKQKFPILSNYELGHDDANRLASIRNQNPVSTGLRLSYDDEEHNSSVTSASGSMAAIPSIISSHGDGVMAELDRQKEEFEKYMKIQEEHMAKGVREMKQRHLTSFLAALQKGVSKKLQEKDLEIENINRKNRALFEKIKQVALEAHSWHSKAKYNESVVNVLKSNLQQAISHGAEQVREGFGDSEVDDSASQIDSKNLGLNYESLKEQMICRVCREKEVSTMLIPCRHLCLCSDCGGSVGVCPVCHSIKTSGIEVYLS 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32710582 32712253 + Bma023553.1 Bma06g00614 84116

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00614 293 Pfam Zinc finger, C3HC4 type (RING finger) 243 282 - -
Bma06g00614 293 ProSiteProfiles Zinc finger RING-type profile. 246 281 IPR001841 -
Bma06g00614 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 220 293 IPR013083 -
Bma06g00614 293 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 3 292 IPR017066 -
Bma06g00614 293 Coils Coil 104 124 - -
Bma06g00614 293 Coils Coil 152 179 - -
Bma06g00614 293 PIRSF SBP1_RNase_bind 2 293 IPR017066 -
Bma06g00614 293 PANTHER S-RIBONUCLEASE BINDING PROTEIN SBP1-RELATED 3 292 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00614 K19042 BOI; E3 ubiquitin-protein ligase BOI and related proteins [EC:2.3.2.27] - mnt:21410357 413.305
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00614 Bma-Chr6:32710582 Bma07g00911 Bma-Chr7:32635519 6.70E-27 dispersed
Bma12g00199 Bma-Chr12:2656672 Bma06g00614 Bma-Chr6:32710582 2.23E-17 dispersed
Bma12g00937 Bma-Chr12:41121314 Bma06g00614 Bma-Chr6:32710582 1.72E-08 dispersed
Bma06g00614 Bma-Chr6:32710582 Bma01g02268 Bma-Chr1:79843646 6.49E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g672 . . Bda01g02217 Bda11g01274 Bpe13g00499 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01274 . . . Bma06g00614 . . . . Cma05g00020 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007540 2 1 0 1 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 0 2 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00614 Bma_Chr06 FPKM 33.698956 37.451313 10.175241 13.651036 11.51703 11.886065 13.615781 0.265011 0.0 0.288029