Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00618 ATGGGGCTGACCTTCACAAAGCTTTTTAGTCGGCTTTTTGCCAAGAAGGAAATGAGGATTCTGATGGTAGGTCTTGATGCTGCTGGTAAGACTACAATCCTCTATAAGCTCAAGCTTGGAGAGATTGTGACAACAATTCCTACTATTGGGTTCAATGTGGAAACAGTAGAGTACAAAAATATCAGCTTCACTGTATGGGATGTTGGTGGTCAGGACAAGATTCGTCCATTGTGGAGGCACTACTTCCAGAACACCCAAGGTCTTATATTCGTTGTGGACAGTAATGATAGAGATCGAGTTGTTGAGGCGAGAGATGAATTGCACAGGATGTTGAATGAGGATGAACTGCGGGATGCTGTTTTGCTTGTCTTTGCTAACAAGCAAGATCTTCCCAATGCAATGAATGCTGCTGAGATTACTGATAAGCTTGGCCTCCACTCTCTCAGACAACGTCACTGGTACATCCAGAGCACTTGTGCAACTTCTGGAGAAGGGCTCTATGAGGGTTTGGATTGGTTATCCAACAACATTGCCAACAAGGTAACTCTTCTACTTTTCTTAGTGCAAAAAATGAAATCTCGATTTCAACTGCAGCCATTATTCCCAGTACCACTAACTGACTTTTCAATGATCCTCCAATAA 642 42.83 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKVTLLLFLVQKMKSRFQLQPLFPVPLTDFSMILQ 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32793714 32795326 + Bma023558.1 Bma06g00618 84120

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00618 213 CDD Arf1_5_like 18 176 IPR045872 GO:0003924
Bma06g00618 213 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Bma06g00618 213 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Bma06g00618 213 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Bma06g00618 213 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Bma06g00618 213 SMART arf_sub_2 1 181 - -
Bma06g00618 213 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
Bma06g00618 213 SMART sar_sub_1 1 177 IPR006689 GO:0003924|GO:0005525
Bma06g00618 213 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 180 IPR024156 GO:0005525
Bma06g00618 213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 179 IPR027417 -
Bma06g00618 213 SMART rab_sub_5 18 184 - -
Bma06g00618 213 TIGRFAM small_GTP: small GTP-binding protein domain 16 156 IPR005225 GO:0005525
Bma06g00618 213 Pfam ADP-ribosylation factor family 5 177 IPR006689 GO:0003924|GO:0005525
Bma06g00618 213 Gene3D - 5 183 IPR027417 -
Bma06g00618 213 PANTHER ADP-RIBOSYLATION FACTOR A1F 1 180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00618 K07937 ARF1_2; ADP-ribosylation factor 1/2 - dcr:108223243 366.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00360 Bma-Chr2:5781799 Bma06g00618 Bma-Chr6:32793714 4.27E-134 dispersed
Bma04g00757 Bma-Chr4:8136186 Bma06g00618 Bma-Chr6:32793714 8.12E-66 dispersed
Bma04g01082 Bma-Chr4:23739698 Bma06g00618 Bma-Chr6:32793714 8.69E-52 dispersed
Bma05g01086 Bma-Chr5:49592980 Bma06g00618 Bma-Chr6:32793714 3.53E-66 dispersed
Bma06g00618 Bma-Chr6:32793714 Bma09g00810 Bma-Chr9:46832687 3.32E-135 dispersed
Bma10g01098 Bma-Chr10:33177454 Bma06g00618 Bma-Chr6:32793714 1.60E-09 dispersed
Bma08g00507 Bma-Chr8:26498004 Bma06g00618 Bma-Chr6:32793714 3.56E-99 transposed
Bma01g00973 Bma-Chr1:9595996 Bma06g00618 Bma-Chr6:32793714 3.13E-130 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g680 . Blo16g01160 . Bda11g01269 Bpe13g01466 . . . . Cmo18g00798 . Cma18g00794 . . Sed06g1643 . . Bhi07g01737 Tan04g1244 Cmetu03g0260 . . . . Cla05g02547 . . Cco05g2808 . . Cre05g2705 . . . . Lsi04g00556 Csa05g02332 Chy10g00900 . . . . Bda11g01269 . . . Bma06g00618 . Cmo04g02828 . Cma04g01736 . . . . . . . . . . . . . . . . . . . . . Chy09g00345 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000063 9 18 10 8 7 8 7 10 8 7 8 7 18 10 10 19 7 15 6 8 11 10 12 9 4 7 7 18 10 9 297
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00618 Bma_Chr06 FPKM 19.8559 22.536577 24.215752 24.243114 34.432617 34.903255 33.852398 31.767145 32.621685 30.320461