Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00626 ATGGTCAATTGGTTTATTTTTTCTCTAATTTTTGGCGCGTCTCCTTTAATTTCAGCGTCTGCTGAGTTTCTTCTGGAAGATGGCTACACCGTGACGACAGTGATCGACGGCCATAAAATCGGCGTAAATCCATACGCTGTTCTTCCTCGACCAGGATCTCCTGATCTTATCGTGCTCGATTCCTCAAATAGTATCTTCTACACCTTATCGCTCCCCTTGTCTACTGAAAGCCCGATTAAAAGGTTGTCTGGAAATGGTAGCGGCTATTCGGATGGAAATCTGGATTCCGCCCTCTTTAGAAACCCTCGGAGCTTTGCGATGGACACAAAGGGAAATATTTACGTCGCTGACAAGAAAAACCATGTGATTCGTAAAATTGGCGACAAAGGTGTATCCACAATTGCGGGAGGTTCCTCGCAGAGCTTGAAGCCAGTTGGGCATGAAGATGGACCGGCTCAAAATGCAACCTTTTCCACTGATTTCGACATCGCCTTTGTTGCAGAGGAGTGTGCTCTGCTGATATCAGATCATGGCAATCAGTTGATCCGACAAATTAATCTCAAACCCGACGATTGCACCACAAAATCACCCCCCGGAGTTGGAGGAGCTTCCATTGCGATTTGGGCAACTGGACTTGGATTTTCTTGCCTGATTGGTATAGTTTTTGGGATAGTGATTCGACCTTATATTATTCGCAGTGAAGGTTTGAGCGGCAGCCATTGCACGCAGACATGGAAGCTCTCCCGAACCCATCTGGGGAGTCAAGCTTGGATTCGCTTCTCCGGCATCAGAAGCGCAATTGCTAGCTCCTTAGTACTTGCTTCATTGAAGAGACTCCTCTGGTTGAGCCTCTCTCATCTTTCACTTCTATTTAGGATGGTAAGTGCTGAGCCTCAGGCTGTTCCAAGCAAGTCTGTTTCCTTGTTTGACGACGAGTCATTCATCACTGGGGAGATAATTAAGTCAAAGCCGGATTTTTATACTGATCAGTTGAAGGATCTGATAGATTTTGGTGGAAATGTGGAGTCATCTTCAAATTCAGGTAATGAAGAAGATGATATTGTTGGAACTACTTCTTGTCTGGAGAGTATGATTGAAGTTAACATCATGAATTTCACCAAGAGGGTCGTAGAGTCGATTCCATTAGAGACATCTTTGGGTTTGGTTAGGAGGAAATGA 1179 44.95 MVNWFIFSLIFGASPLISASAEFLLEDGYTVTTVIDGHKIGVNPYAVLPRPGSPDLIVLDSSNSIFYTLSLPLSTESPIKRLSGNGSGYSDGNLDSALFRNPRSFAMDTKGNIYVADKKNHVIRKIGDKGVSTIAGGSSQSLKPVGHEDGPAQNATFSTDFDIAFVAEECALLISDHGNQLIRQINLKPDDCTTKSPPGVGGASIAIWATGLGFSCLIGIVFGIVIRPYIIRSEGLSGSHCTQTWKLSRTHLGSQAWIRFSGIRSAIASSLVLASLKRLLWLSLSHLSLLFRMVSAEPQAVPSKSVSLFDDESFITGEIIKSKPDFYTDQLKDLIDFGGNVESSSNSGNEEDDIVGTTSCLESMIEVNIMNFTKRVVESIPLETSLGLVRRK 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33393409 33394900 - Bma023571.2 Bma06g00626 84128

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00626 392 Gene3D - 27 186 IPR011042 -
Bma06g00626 392 Pfam NHL repeat 99 124 IPR001258 GO:0005515
Bma06g00626 392 SUPERFAMILY NHL repeat 28 188 - -
Bma06g00626 392 PANTHER - 4 373 - -
Bma06g00626 392 PANTHER NHL DOMAIN-CONTAINING PROTEIN 4 373 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00626 - - - pvy:116121337 321.627
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00626 Bma-Chr6:33393409 Bma14g01509 Bma-Chr14:30426160 6.44E-40 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g749 Blo01g00400 Blo16g01153 Bda01g02227 Bda11g01257 Bpe13g01455 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01257 . . . Bma06g00626 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016197 2 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 7
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00626 Bma_Chr06 FPKM 34.521389 39.299297 29.148022 30.363205 24.378622 30.974472 26.654814 29.188921 35.361984 36.992249