Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00627 ATGGCGGCGGAGCATTTAAAAGATGAGGACTACCTCAAAATTATAATTCCCAAGCGCATCCAGCTATTTGAGTCCATCAAAGCTCAGCAGCTAGCTCATCGTCAATCTCTCGCGTCGGATCGCATCAAGATTACCTTGCCGGACGGAACAGTGAAGGAAGGCAAGAAGTGGCAAACATCTCCCTTTGACATTGCGAAGGAACTTTCAAAAAGTTTGGCTACAAACGCTTTGATTTCTCAAGTGGACGGAGTTTTATGGGACATGAGTAGACCGCTTGAGAGTGACTGTGAGATTAAGATTTTCACTTTTAGTAGCGATGAAGGGCGTGATACGTTTTGGCATTCTAGTGCTCATATACTCGGACAGTCACTAGAGATGGAATACGGTTGCAAGCTTTGCATTGGACCTTGCACCACTCGAGGAGAGGGCTTCTATTATGATGCATTTTATGGTGATTTAGGCTTGAATGAAGACCATTTCAAAAAAATTGAAGCGGGGGCACTAAAGGCTGTTGCGGAGAAACAGCCATTTGAGCGTATTGAAGTGACAAGGCAACAGGCACTTGAGATGTTTTCTGACAATACGTTTAAGGTTGAAATTATCAAAGATTTGCCTGAAGACAAGACTATTACAGTATATAGATGTGGCCCTCTAGTTGATTTATGTCGCGGCCCCCACATTCCAAATACATCCTTTGTGAAGGCGATTGCATGTCTGAAGGCTTCATCAGCCTATTGGAGAGGAAACAAAGATCGCGAAAGCTTACAAAGGGTTTATGGTATCTCTTATCCCGATCAAAAAAGTTTGAAGGAATATATACATTTGCTGGAAGAAGCCAAGAAGTATGACCATCGTTTGTTGGGTACAAAACAAGATCTTTTCTTTTGCCATCCGCTTAGTCCAGGAAGTTGGTTCTTCCTCCCTCATGGGGCTCGAATCTACAACAAACTAATGGAGTTTATACGGACACAATATAGGGAGAGAGGTTATGAAGAGGTTATATCACCAAATATGTACAATATGCAACTTTGGGAAACATCTGGTCATGCTGCAAATTACAAGGAGAATATGTTTGTGTTTGAGATTGAAAAGCAAGAATTTGGATTGAAGCCAATGAATTGTCCTGGGCACTGTTTGATGTTCCAACACAGAGTTCGCTCATATAGGGAACTTCCTCTTCGATTGGCTGATTTTGGAGTTTTGCACCGTAATGAGGCCAGTGGTGCTCTGACTGGGCTAACTCGTGTGAGGAGGTTTCAACAGGATGATGCTCACATCTTCTGCTCTAAGTCTCAAATAAAAGATGAAGTGAGGGGCGTGTTAGAATTCATCAAATATATCTACAACATTTTTGGGTTCACCTTTGATCTGAAGCTGTCAACGAGGCCTGAAAAATACCTTGGAGACATAGCTACATGGGAGGAAGCTGAAGCAGCTCTTACAGAAGCGTTAAATGAATTTGGTAAACCCTGGCAGCTAAATGAAGGTGATGGTGCATTTTACGGGCCAAAGATAGACATTAGTGTTTCTGACGCATTGAAGAGGAAATTTCAATGTGCGACACTACAGTTGGACTTCCAACTTCCCAAGCGTTTTGAATTATATTACTCTACAGAGGATGAAGCCAAGAGAGAGATGCCTGTGATGATACATAGAGCCATATTGGGGTCCGTTGAGCGAATGTTTGCTATTTTGTTGGAGCATTATAAGGGGAAATGGCCTTTTTGGCTTAGTCCACGTCAAGCCATTGTTTGTCCCGTGTCGGAGAAATCCCAATCTTACGCGCTTACGGTGCGTGATCAAATTCATCATGCTGGTTATTACGTAGATGCCGATATAACTGATCGGAAGATCCAAAAAAAGGTACGAGAAGCCCAGTTGGCGCAGTACAACTTTATCTTGGTTGTTGGTGAGGAGGAGGCCAACACTGGACAGGTGATTACTTATAAACACTCCTAA 1959 42.78 MAAEHLKDEDYLKIIIPKRIQLFESIKAQQLAHRQSLASDRIKITLPDGTVKEGKKWQTSPFDIAKELSKSLATNALISQVDGVLWDMSRPLESDCEIKIFTFSSDEGRDTFWHSSAHILGQSLEMEYGCKLCIGPCTTRGEGFYYDAFYGDLGLNEDHFKKIEAGALKAVAEKQPFERIEVTRQQALEMFSDNTFKVEIIKDLPEDKTITVYRCGPLVDLCRGPHIPNTSFVKAIACLKASSAYWRGNKDRESLQRVYGISYPDQKSLKEYIHLLEEAKKYDHRLLGTKQDLFFCHPLSPGSWFFLPHGARIYNKLMEFIRTQYRERGYEEVISPNMYNMQLWETSGHAANYKENMFVFEIEKQEFGLKPMNCPGHCLMFQHRVRSYRELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCSKSQIKDEVRGVLEFIKYIYNIFGFTFDLKLSTRPEKYLGDIATWEEAEAALTEALNEFGKPWQLNEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPKRFELYYSTEDEAKREMPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQSYALTVRDQIHHAGYYVDADITDRKIQKKVREAQLAQYNFILVVGEEEANTGQVITYKHS 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33397234 33402333 + Bma031289 Bma06g00627 84129

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00627 652 PANTHER THREONINE--TRNA LIGASE, CYTOPLASMIC 2 646 - -
Bma06g00627 652 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 274 574 IPR006195 -
Bma06g00627 652 CDD ThrRS_anticodon 579 646 - -
Bma06g00627 652 SUPERFAMILY Class II aaRS and biotin synthetases 283 566 IPR045864 -
Bma06g00627 652 Gene3D - 573 651 IPR036621 -
Bma06g00627 652 TIGRFAM thrS: threonine--tRNA ligase 113 646 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bma06g00627 652 CDD ThrRS_core 283 579 IPR033728 -
Bma06g00627 652 Gene3D Bira Bifunctional Protein; Domain 2 265 572 IPR045864 -
Bma06g00627 652 SUPERFAMILY ThrRS/AlaRS common domain 104 281 IPR018163 GO:0000166
Bma06g00627 652 SMART tRNA_SAD_4 210 259 IPR012947 GO:0004812|GO:0005524|GO:0043039
Bma06g00627 652 Hamap Threonine--tRNA ligase [thrS]. 107 652 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bma06g00627 652 PRINTS Threonyl-tRNA synthetase signature 369 397 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bma06g00627 652 PRINTS Threonyl-tRNA synthetase signature 402 425 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bma06g00627 652 PRINTS Threonyl-tRNA synthetase signature 574 586 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bma06g00627 652 PRINTS Threonyl-tRNA synthetase signature 503 531 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bma06g00627 652 PRINTS Threonyl-tRNA synthetase signature 547 560 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bma06g00627 652 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 360 569 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bma06g00627 652 Pfam TGS domain 42 102 IPR004095 -
Bma06g00627 652 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 210 259 IPR012947 GO:0004812|GO:0005524|GO:0043039
Bma06g00627 652 PANTHER THREONINE-TRNA LIGASE 2 646 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bma06g00627 652 Gene3D - 40 102 IPR012675 -
Bma06g00627 652 SUPERFAMILY Class II aaRS ABD-related 567 647 - -
Bma06g00627 652 Gene3D - 105 263 - -
Bma06g00627 652 SUPERFAMILY TGS-like 42 103 IPR012676 -
Bma06g00627 652 Pfam Anticodon binding domain 581 646 IPR004154 -
Bma06g00627 652 ProSiteProfiles TGS domain profile. 40 102 IPR004095 -
Bma06g00627 652 CDD TGS_ThrRS 42 107 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00627 K01868 TARS, thrS; threonyl-tRNA synthetase [EC:6.1.1.3] - csv:101212232 1214.13
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00058 Bma06g00627 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00672 Bma-Chr8:41770028 Bma06g00627 Bma-Chr6:33397234 1.68E-68 transposed
Bma01g00058 Bma-Chr1:599027 Bma06g00627 Bma-Chr6:33397234 5.69E-131 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g751 Blo01g00402 Blo16g01152 Bda01g02229 Bda11g01256 Bpe13g01454 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01256 . . Bma01g00058 Bma06g00627 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003702 2 1 2 2 1 1 3 1 1 0 1 1 3 0 1 3 1 1 2 1 1 1 2 2 2 1 1 3 3 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00627 Bma_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.507258 0.49917 0.2269