Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00628 ATGAGGGTAGCTGAAGCTCTTCCGTTTTTGGGGATGGTTATGGCGGAGAGTGCTCAGGTTTCACTGATGATACTGAGCAAGGTCGCCATTCAAAACGGCTTGAGCGCCATCGTCTTCGTCTTTTACTGTAACGCTTTTGCCTCCCTCCTTCTCCTTCCTTCTTCCTTTCTTTTTCACAGCAGGTCGGAACTCCCTCCATTAACTATACCAATCTTTTGTGGACTTATCGTTCTAGGGTCTGTTGGAAGCTTTGCTCAAATTTCTAGATATGTTGGGGTAAATTATAGCAACCCTACTCTTGGTACAGTATTGCTCAATCTTGTCCCTGGTTTCACCTTTGTCTTTGCCGCCATTTGCAGGATTGAAAAAGTGCAATGGCGAAGCTTGACAACAGTAGTTAAATCCATTGGAACTATAGTGTCCGTTGGTGGAGCATTTATTGTCACTCTCTATAAGGGTCGTCCCCTTCTGATTAGATCTTTTAATTCAAGCATCCCTCATAACCAATTATTTCTACAAAAATCAGACTGGGTAATTGGAGGAACATTTCTTGCAGTAGATTCTGTGCTCTCTGCAGTTTGGCTTGTAATGCAGGCATTTATTATTAAGAAGTACCCAGCAGAGCTGATTGTAGTTTTCTTTTACTGCTTCTTTGTGGCTGTACAATGTGGAATATGCGGATTGGTTTTTGAAAGAGATCTTACTTTTTGGAGTTTAGATTCAAGCACAAAGTTGATTGCTACTTTTGTCTCTACTCTTTTTGGGACTGTCTTCCGAGTTGTTGTCTGCACATGGTGCTTGCACAAAGCAGGACCTGTTTTTGCCGCCATGTTCAAGCCCCTGGGAATCGTTATTGCAGCTCTAGTGGGTGTCATCTTCTTTGGGGATACGTTATACCTTGGAACTTTGATTGGAGGAATCGTAATTGTCGTCGGTTTTTATACTGTGATGTGGGGAAAATCCAAGGAGGGAAAGGACAGTGATGAAGCAAAAACAAAAGGCTTGGAATCAAGTGAACAAAAAGTGGCTCTCTTGCAAAATAGTTCTGAGCCATCGGAGTCTGTGCCATGA 1071 42.67 MRVAEALPFLGMVMAESAQVSLMILSKVAIQNGLSAIVFVFYCNAFASLLLLPSSFLFHSRSELPPLTIPIFCGLIVLGSVGSFAQISRYVGVNYSNPTLGTVLLNLVPGFTFVFAAICRIEKVQWRSLTTVVKSIGTIVSVGGAFIVTLYKGRPLLIRSFNSSIPHNQLFLQKSDWVIGGTFLAVDSVLSAVWLVMQAFIIKKYPAELIVVFFYCFFVAVQCGICGLVFERDLTFWSLDSSTKLIATFVSTLFGTVFRVVVCTWCLHKAGPVFAAMFKPLGIVIAALVGVIFFGDTLYLGTLIGGIVIVVGFYTVMWGKSKEGKDSDEAKTKGLESSEQKVALLQNSSEPSESVP 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33417430 33428765 + Bma023572.1 Bma06g00628 84130

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00628 356 MobiDBLite consensus disorder prediction 339 356 - -
Bma06g00628 356 MobiDBLite consensus disorder prediction 323 356 - -
Bma06g00628 356 PANTHER WAT1-RELATED PROTEIN 9 332 IPR030184 GO:0016021|GO:0022857
Bma06g00628 356 PANTHER WAT1-RELATED PROTEIN 9 332 - -
Bma06g00628 356 SUPERFAMILY Multidrug resistance efflux transporter EmrE 217 322 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00628 - - - qlo:115982691 386.726
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00060 Bma06g00628 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00628 Bma-Chr6:33417430 Bma01g00742 Bma-Chr1:6828221 4.39E-51 dispersed
Bma06g00628 Bma-Chr6:33417430 Bma06g00629 Bma-Chr6:33430490 6.66E-69 tandem
Bma13g00519 Bma-Chr13:10286690 Bma06g00628 Bma-Chr6:33417430 5.97E-78 transposed
Bma14g01518 Bma-Chr14:30682173 Bma06g00628 Bma-Chr6:33417430 9.01E-75 transposed
Bma01g00060 Bma-Chr1:617779 Bma06g00628 Bma-Chr6:33417430 7.39E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g753 Blo01g00404 . Bda01g02231 . Bpe13g00487 . . . . Cmo18g00829 . Cma18g00826 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00060 Bma06g00628 . Cmo04g02852 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004958 1 1 1 2 2 1 3 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 3 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00628 Bma_Chr06 FPKM 85.228455 94.37352 79.116943 79.549667 63.509605 65.976295 65.756676 82.561005 76.834709 93.311806