Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00630 ATGCCTTTCAGTTTGCTTGCGGCGTGGAACAAGCGAAGAAGAAGCAAGACTTCCGACCATACAGACCCTTGGATTTACAAACCGATAGAGGATTGGAAACTCGAAGTTCAATCCCCCCAACACAGCAAAAGGAGTCATGGATCATCAGTTTTTACACTCAAGGAGATGGAGGAGGCAACTTGTTCTTTTGGCGACGAGAATTTGGTCGGAAAAGGTGGATTCGGCCGGGTTTACAGAGGAATTTTACGGTCAGGAGAGGTTGTAGCAATCAAGAAAATGGTGCTACCATCTTCTAAAGAAGCTGAGGGAGAACGAGAATTCCGAGTTGAAGTCGATATTTTGAGCAGACTCGACCATCCGAATCTTGTATCGTTGATCGGCTATTGTGCAGACGGAAAACATCGATTTCTGGTATACGAGTATATGCACAACGGGAACCTGCAAGATCACTTAAATGAAATGGACTGGCCGTTGAGGTTGAAAGTAGCACTTGGAGCAGCCAAGGGACTTTCCTACTTACATTCAAGCTCCGCTGCCGGAATCCCCATTGTTCATCGCGATTTCAAATCGACAAACATTCTTCTAAATTCCAACTTTGACGCAAAGATATCGGATTTTGGTCTTGCGAAGTTCATGCCAGAAGGTCAGGATACTTACGTAACAGCTAGAATGTTTGGCACTTTCGGCTACTTCGATCCTGAGTATACATCGACGGGAAAACTAACCGTGCAAAGCGATGTTTACGCGTTTGGAGTCGTTCTTCTCGAGCTTTTGACTGGGCGACGAGCTGTGGAATTAAACCAAGGACCCACCCATCAAAATCTAGTTCTACAAGTAGATAAAATATTTCCAATTTTTGGACAAATTACAATCCTCCATCTTCAAAAATGA 891 44.22 MPFSLLAAWNKRRRSKTSDHTDPWIYKPIEDWKLEVQSPQHSKRSHGSSVFTLKEMEEATCSFGDENLVGKGGFGRVYRGILRSGEVVAIKKMVLPSSKEAEGEREFRVEVDILSRLDHPNLVSLIGYCADGKHRFLVYEYMHNGNLQDHLNEMDWPLRLKVALGAAKGLSYLHSSSAAGIPIVHRDFKSTNILLNSNFDAKISDFGLAKFMPEGQDTYVTARMFGTFGYFDPEYTSTGKLTVQSDVYAFGVVLLELLTGRRAVELNQGPTHQNLVLQVDKIFPIFGQITILHLQK 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33471897 33473176 + Bma023574.1 Bma06g00630 84132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00630 296 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL28-RELATED 1 282 - -
Bma06g00630 296 ProSiteProfiles Protein kinase domain profile. 63 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g00630 296 Pfam Protein kinase domain 66 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma06g00630 296 Gene3D Transferase(Phosphotransferase) domain 1 142 286 - -
Bma06g00630 296 CDD STKc_IRAK 69 267 - -
Bma06g00630 296 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Bma06g00630 296 SUPERFAMILY Protein kinase-like (PK-like) 43 281 IPR011009 -
Bma06g00630 296 ProSitePatterns Protein kinases ATP-binding region signature. 69 92 IPR017441 GO:0005524
Bma06g00630 296 PANTHER OS01G0750732 PROTEIN 1 282 - -
Bma06g00630 296 Gene3D Phosphorylase Kinase; domain 1 29 141 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00630 - - - vvi:100251958 487.263
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00630 Bma-Chr6:33471897 Bma15g00679 Bma-Chr15:11162224 3.10E-83 dispersed
Bma06g00630 Bma-Chr6:33471897 Bma10g00543 Bma-Chr10:6598170 1.91E-80 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g767 . Blo16g01150 . Bda11g01254 Bpe13g01451 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0647 . . . . . . . . Bda11g01254 . . . Bma06g00630 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009568 1 1 1 1 1 0 1 0 0 1 1 0 1 1 0 1 0 0 1 0 1 0 0 0 0 1 0 0 0 1 15
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66541 PF00069 Pkinase 2.20E-46 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00630 Bma_Chr06 FPKM 0.0 1.732599 2.128861 4.180427 10.659964 12.943629 7.178205 4.993789 6.941639 5.189682