Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00647 ATGGCTCCGGCGACTAACTGGCTGTCGTTCTCTTTATCTCCGGTTGAAATGATGAGGTCATCTGCTGAATCTCAGTTCATGCCCTATGAGACCTCTTCCACTGCTTCTCCTCACTATCTGCTCGATAACTTCTACGCGAATGGTACTCCATCTGGATTAGATTTGAACAAAGATGAAATTTTGATTTTTTTTTCAGGCTGGGCAAATCCCAAACAAGTTCAAGCTTCTACTGATTCCCCTATTCTGACCAGCTTCATTGATCACCAAAGCCAGAACCAAGGAGTGCCGAAACTGGAAGACTTTCTCGGCGACTCATCGCTGATGATTCGATATTCTGATAGCCAAACGGAGACTCAAGACTCGTCTTTAACCCAAATGTACGACCATGGTTCGACATACTATAATGACCACCAAGATCTCAAAGCTGTTACTGGGTTTCAAGCATTTTCAGCCAACTCTTGTTCAGAAGTGGATGACTCGGCCTCCATCGCTCGGAAGCAGCTCGCCTGCGGCGAGTTCGCGGGTTATTCTATGGACTCATCCGGCACCGAGTTAGCTTTTACTAACTGTTCTACCGGTGCTCTTTCACTTGGGGTTGCTCGGAGCTCCGAGAAAGCGGTTGTTTCGGTAGAGTCTGATAGCTCGAAGAAGATTGCCGATACCTACGGCCAGCGAACTTCGATTTACAGAGTTTTGTGTGGATTTTCAGGTGGATATGACAAAGAAGACAAGGCAGCACGAGCTTATGATCTAGCAGCTTTGAAATACTGGGGTCCTACTGCCACCACCAACTTTCCTGTCTCAAATTACAGTAAAGAATTGGAGGAGATGAAACTTGTGACTAAGCAAGAATTCATTGCATCTCTCAGAAGGAAAAGTAGCGGTTTTTCGAGGGGAGCTTCAATTTATCGAGGGGTGACGAGGCACCATCAGCAGGGAAGGTGGCAAGCGAGAATAGGCCGTGTTGCCGGGAATAAGGATCTGTACCTCGGGACCTTTGCCACGGAAGAGGAGGCGGCGGAAGCTTACGACATTGCAGCCATAAAGTTCAGAGGTTTAAATGCGGTGACAAACTTTGAGATGGGACGATACGATGTCGAAGCTATTTCGAAGAGTAATCTACCCATCGGAGGAGCGGCTAAACGGCTAAAGCTCTCACTCGAATCCGAGCAAAAGCCGTCTATTTTACACCACAGTTTACAGTCACCGAGACTATGTGCCGGAAACAACATAAGTTTTGGCCCAATCCAACCCGTTCCGGCTATCCCGTACGATGCTTCTACTTCGATGCTTTATCATCACAACCTTTTCCACCACCTCCAGACCAATAGCCTTGGCACTTCCACCTCAACTTCTAACCCTCTAATGGCGGCTCCGATGAACCCGATGCCACAGCTGGCTGAGTTTTTTGTCTGGCCCCATCAGTCCTATTGA 1434 47.84 MAPATNWLSFSLSPVEMMRSSAESQFMPYETSSTASPHYLLDNFYANGTPSGLDLNKDEILIFFSGWANPKQVQASTDSPILTSFIDHQSQNQGVPKLEDFLGDSSLMIRYSDSQTETQDSSLTQMYDHGSTYYNDHQDLKAVTGFQAFSANSCSEVDDSASIARKQLACGEFAGYSMDSSGTELAFTNCSTGALSLGVARSSEKAVVSVESDSSKKIADTYGQRTSIYRVLCGFSGGYDKEDKAARAYDLAALKYWGPTATTNFPVSNYSKELEEMKLVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMGRYDVEAISKSNLPIGGAAKRLKLSLESEQKPSILHHSLQSPRLCAGNNISFGPIQPVPAIPYDASTSMLYHHNLFHHLQTNSLGTSTSTSNPLMAAPMNPMPQLAEFFVWPHQSY 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 34511454 34514894 + Bma023605.1 Bma06g00647 84149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00647 477 SUPERFAMILY DNA-binding domain 301 361 IPR016177 GO:0003677
Bma06g00647 477 SMART rav1_2 224 272 IPR001471 GO:0003700|GO:0006355
Bma06g00647 477 SMART rav1_2 302 366 IPR001471 GO:0003700|GO:0006355
Bma06g00647 477 CDD AP2 301 360 IPR001471 GO:0003700|GO:0006355
Bma06g00647 477 ProSiteProfiles AP2/ERF domain profile. 195 266 IPR001471 GO:0003700|GO:0006355
Bma06g00647 477 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR-RELATED 5 231 - -
Bma06g00647 477 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 231 - -
Bma06g00647 477 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR-RELATED 235 474 - -
Bma06g00647 477 ProSiteProfiles AP2/ERF domain profile. 302 360 IPR001471 GO:0003700|GO:0006355
Bma06g00647 477 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 235 474 - -
Bma06g00647 477 Gene3D AP2/ERF domain 216 268 IPR036955 GO:0003700|GO:0006355
Bma06g00647 477 Gene3D AP2/ERF domain 302 361 IPR036955 GO:0003700|GO:0006355
Bma06g00647 477 SUPERFAMILY DNA-binding domain 236 268 IPR016177 GO:0003677
Bma06g00647 477 Pfam AP2 domain 302 352 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01197 Bma-Chr3:18063167 Bma06g00647 Bma-Chr6:34511454 0 dispersed
Bma06g00647 Bma-Chr6:34511454 Bma07g00696 Bma-Chr7:14932798 6.02E-09 dispersed
Bma06g00647 Bma-Chr6:34511454 Bma07g01409 Bma-Chr7:49858960 6.52E-82 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57460 PF00847 AP2 1.80E-10 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00647 K09285 - qsu:112018242 619.002