Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00658 ATGTTAAACCAGGAAAATAAGAATCCAAGTGAGAGCGAAGAAGACTCAATTTTCCCGCCGGACCAGAAAGAAGAAAGCTATGGAGAAGATGACGACGGAGGTCTTCTTCAACCCGGAAAGAAAAGAAGATTGACCGTCAATCAAGTGAAGTATTTGGAGAAACATTTCGAGGAAGAAAATAAGCTGGAACCAGAGAGAAAAGTGGGGCTGGCTAAAGAACTGGGTTTACAGCCGAGACAAGTCGCGATCTGGTTTCAGAACAGACGAACCCGGTTGAAGACAAAACAGCTGGAGAAAGACTACGGATCGTTAAAGCCTAACTATGATAAACTCATGGCTGATTATGGTAATCTGCTCAAGCAAAATGAAGATTTGAAAACAAAGATCAATGAAATGAAAGAAGAATTGGTCAAGAGGGAGAAGAGGAGTAAAAAGATGGGTAATTTAGAACAGGTTGAAGCCATGGCCGTTCAAGTTGCAGAGCTTGAAAACCTGTGGTCAAATTCAGACTCCAATCCGGTCTGCAACTTAGGAATGGCGATGAGAGGCAAACAAGGAGAGGCAAGCTCAGACAAGAGCGATACGTTCGATTCAGTGAGTCCATTCAACACAGAGAACCATTCGTCTATAATGGAGGCTGGTAATTCAGCGCAGTCGGATTTCTCGCAAAACGAAGAAGATGACTTCTCCAGAACCCTTTTTCCGCAGTTTTTCCCGAAGGTCGAAGAAGAGGAAGAGTTTTCAAAGAGTTGTGTCTTTGGATACCCAGATGACGAGCAGAGGCTCTGTTTTTGGCCTTACTTCTCTTCAGAAATATGA 819 43.47 MLNQENKNPSESEEDSIFPPDQKEESYGEDDDGGLLQPGKKRRLTVNQVKYLEKHFEEENKLEPERKVGLAKELGLQPRQVAIWFQNRRTRLKTKQLEKDYGSLKPNYDKLMADYGNLLKQNEDLKTKINEMKEELVKREKRSKKMGNLEQVEAMAVQVAELENLWSNSDSNPVCNLGMAMRGKQGEASSDKSDTFDSVSPFNTENHSSIMEAGNSAQSDFSQNEEDDFSRTLFPQFFPKVEEEEEFSKSCVFGYPDDEQRLCFWPYFSSEI 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 35569910 35570971 - Bma023621.1 Bma06g00658 84160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00658 272 Coils Coil 108 142 - -
Bma06g00658 272 MobiDBLite consensus disorder prediction 8 24 - -
Bma06g00658 272 MobiDBLite consensus disorder prediction 1 42 - -
Bma06g00658 272 CDD homeodomain 38 96 IPR001356 GO:0003677
Bma06g00658 272 PRINTS Lambda-repressor HTH signature 75 91 IPR000047 GO:0003677
Bma06g00658 272 PRINTS Lambda-repressor HTH signature 66 75 IPR000047 GO:0003677
Bma06g00658 272 Pfam Homeodomain 40 93 IPR001356 GO:0003677
Bma06g00658 272 ProSitePatterns 'Homeobox' domain signature. 70 93 IPR017970 GO:0000981|GO:0006355
Bma06g00658 272 SUPERFAMILY Homeodomain-like 33 97 IPR009057 -
Bma06g00658 272 Pfam Homeobox associated leucine zipper 95 136 IPR003106 GO:0006355|GO:0043565
Bma06g00658 272 Gene3D - 89 139 - -
Bma06g00658 272 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 9 265 IPR045224 GO:0003700
Bma06g00658 272 SMART HOX_1 37 99 IPR001356 GO:0003677
Bma06g00658 272 ProSiteProfiles 'Homeobox' domain profile. 40 95 IPR001356 GO:0003677
Bma06g00658 272 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5-LIKE 9 265 - -
Bma06g00658 272 Gene3D - 44 88 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00658 - - K09338 zju:107428804 242.276
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00080 Bma06g00658 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00658 Bma-Chr6:35569910 Bma06g00668 Bma-Chr6:35912817 0 dispersed
Bma14g01180 Bma-Chr14:17507185 Bma06g00658 Bma-Chr6:35569910 4.18E-06 dispersed
Bma01g00080 Bma-Chr1:768171 Bma06g00658 Bma-Chr6:35569910 1.77E-127 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g846 . Blo16g01135 . Bda11g01236 Bpe13g00467 . . . . . . . . . Sed04g0677 . . Bhi07g01613 Tan04g1126 Cmetu10g1215 Lac13g0276 Hepe10g1711 . . Cla05g02477 Cam05g2661 Cec05g2695 Cco05g2730 Clacu05g2663 Cmu05g2517 Cre05g2632 . . Cone6ag0614 Cone9ag0617 Lsi04g00464 Csa05g02414 Chy10g00972 Cme10g00452 . . . Bda11g01236 . . Bma01g00080 Bma06g00658 . . . . . Car04g01668 Car15g00313 Cpe13g00941 . . . . . . . . . . . . . . . . . Chy09g00265 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003231 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57461 PF00046 Homeodomain 1.80E-15 CL0123 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00658 Bma_Chr06 FPKM 28.843983 29.823473 26.945421 27.897842 21.495134 20.028522 21.144316 13.428779 14.034912 12.973656