Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00660 ATGGCGGAATTTGGAGTTAAGGTACTTGTTTTGTTGTTATTGGGTGTGGTAGCCAACGCTAACATCGGAGAGTTTGATGATTACTGGAAAAATCGAGCCGAGGAAGCCAAATTGGCGGCTCTTGACGCATACGATCCTAACCCTGAGGCCGTTACCGATAGTTTCAACGCTCAAGTTGGCAAAGCAATTGCGGGAACGAACACCACAAGAAGAAATCTGAGGAAAAACAAAGGCCCATGCAGGGCGACGAACCCCATTGACAGGTGTTGGAGGTGCGATCCAAACTGGGCAAACAACCGGAAGAAGCTAGCCAGCTGCGTTCTCGGCTTCGGCCGGAGGACCTTCGGAGGAAAATACGGCCGATATTACGTCGTCACTGACTCTTCCGACTCTGATCTACTCAACCCTAAACCAGGAACTCTCCGGCACGCCGTGATTCAGAATCAACCCCTCTGGATCGTCTTCGCCAGAAGCATGGTAATTCGCCTGACCCAAGAGCTAATGGTGAACAGCCATAAAACCATTGACGCTCGAGGAGTCAACGTCCATATCGCGTTCGGAGCTGGAATTACGGTCCAGTTTGTGAAGAATGTGATCATCCATGGCCTCCATATCCACGACATTGTTGCCGGCACCGGCGGACTAATCAGAGATTCCGTCAACCATTATGGGTTTAGAACAAAGAGTGATGGCGATGGAATTTCAATCTTCGGAGCTTCAAATGTTTGGATCGATCACATTTCCATGTCCAACTGCCAAGACGGACTAATCGACGCTATCATGGGATCTACTGCTATCACCATCTCCAACTGTCACTTCACTCACCACAACGAGGTGATGCTGTTTGGAGCGAGCGACAGCTATTCCGGCGATGCAATAATGCAAGTGACGGTGGCTTTCAACCATTTCGGAAGAGGGTTAGTGCAGAGAATGCCGAGGTGCAGATGGGGCTTCTTCCACGTCGTTAACAATGACTACACCCACTGGCTCATGTACGCCATTGGAGGCAGCCAACATCCCACCATTGTTAGCCAGGGGAATCGCTTTATTGCTCCTCACAATGCAGCTGCTAAAGAGGTGACGAAGAGGGATTATGCAACACAAGAAACGTGGAAAAACTGGATATGGAGATCAGAGGGGGATCTACTAGTGAATGGAGCATTCTTTGTGAGGTCAGGAGATCAAAGTAGAAGGAGGCCATTTCACAGGATGGATATGATCTCCTACAAGCCCGGGTCTTTCGTCAGCAGGCTAACTCGCTTTTCTGGAGCCCTCGATTGCTTCATTGGCCGGCCGTGTTAG 1302 49.92 MAEFGVKVLVLLLLGVVANANIGEFDDYWKNRAEEAKLAALDAYDPNPEAVTDSFNAQVGKAIAGTNTTRRNLRKNKGPCRATNPIDRCWRCDPNWANNRKKLASCVLGFGRRTFGGKYGRYYVVTDSSDSDLLNPKPGTLRHAVIQNQPLWIVFARSMVIRLTQELMVNSHKTIDARGVNVHIAFGAGITVQFVKNVIIHGLHIHDIVAGTGGLIRDSVNHYGFRTKSDGDGISIFGASNVWIDHISMSNCQDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDSYSGDAIMQVTVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPHNAAAKEVTKRDYATQETWKNWIWRSEGDLLVNGAFFVRSGDQSRRRPFHRMDMISYKPGSFVSRLTRFSGALDCFIGRPC 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 35657954 35659820 + Bma023623.1 Bma06g00660 84162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00660 433 PANTHER PECTATE LYASE 18-RELATED 14 433 IPR045032 GO:0030570
Bma06g00660 433 PANTHER PECTATE LYASE 14 433 - -
Bma06g00660 433 Pfam Pectate lyase 168 349 IPR002022 -
Bma06g00660 433 Gene3D - 83 426 IPR012334 -
Bma06g00660 433 SMART amb_all 158 355 IPR002022 -
Bma06g00660 433 PRINTS Pollen allergen Amb family signature 166 182 IPR018082 -
Bma06g00660 433 PRINTS Pollen allergen Amb family signature 374 398 IPR018082 -
Bma06g00660 433 PRINTS Pollen allergen Amb family signature 230 251 IPR018082 -
Bma06g00660 433 PRINTS Pollen allergen Amb family signature 106 123 IPR018082 -
Bma06g00660 433 PRINTS Pollen allergen Amb family signature 332 351 IPR018082 -
Bma06g00660 433 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Bma06g00660 433 PRINTS Pollen allergen Amb family signature 130 155 IPR018082 -
Bma06g00660 433 PRINTS Pollen allergen Amb family signature 404 427 IPR018082 -
Bma06g00660 433 Pfam Pectate lyase, N terminus 21 73 IPR007524 GO:0030570
Bma06g00660 433 SUPERFAMILY Pectin lyase-like 84 424 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01025 Bma-Chr1:10648154 Bma06g00660 Bma-Chr6:35657954 1.14E-150 dispersed
Bma02g00407 Bma-Chr2:6245887 Bma06g00660 Bma-Chr6:35657954 0 dispersed
Bma06g00660 Bma-Chr6:35657954 Bma06g00671 Bma-Chr6:35999301 0 dispersed
Bma07g00796 Bma-Chr7:23965521 Bma06g00660 Bma-Chr6:35657954 1.61E-146 dispersed
Bma01g00083 Bma-Chr1:818412 Bma06g00660 Bma-Chr6:35657954 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00660 K01728 - csv:101206497 702.205