Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00662 ATGATATTCTTTACAACCACAGGGAGGAAACTGATATTCCTGCATAAATATTCTTTCCTTCCGCTTAAGAAGCAAAGCCCGCCGATTGAAAGGAGCGAAGAAACGATGCAGCGGCTACACTTGCTATCTTCTTCTTCTTCTTCTTCATTTGCTGCTCCTCAAAACCCTGAAACTTGTCCTTTCCTTAAGCTTTCCTCCAACTATCCGTCTAGAAGCTTCTTTCTCAACTTCAATGCCTACCGGCCTCTTCCAACGCACTCCACAAGCTGGAAGCTCTCTGTGAAATGCCGGTACTCTGAGTACTTCGACCAGCAGCAGAAGAAGCAGTCGGGATTCGACGCCGGAACTTCTCCGAATAACAATTCTGCTCCACAGTCTCGGCCTGGAGCTGCTGGAGCGTTGTCAACTAGGTACTTCGTGGGTCATTCAATATACAAAGGGAAGGCAGCTCTTACGGTGGAGCCACGGGCGCCAGAGTTTACTTCTCTAGATTCAGGAGCGTTCAAACTATCAAAGGAAGGCGTTGTTGTTCTTCAGTTTGCTCCCGCAGCTGGTGTTCGTCAATATGATTGGAGCAAAAAACAGGTATTCTCTTTGTCAGTGACAGAAATTGGGAGTCTTGTTGCCCTTGGCCCAAGAGATTCGTGTGAATTTTTCCACGACCCTTTTAAGGGAAAAAGTGAGGAAGGGAAAGTTAGGAAGGTATTGAAAGTGGAGCCCCTTCCAGATGGTTCTGGTCATTTCTTCAACATCAGTGTTCAGAACAAGCTTATCAACATGGACGAGAGTATTTATATACCTGTCACCAAAGCAGAATACGCTGTACTTGTCTCAGCATTCAATTTTATCTTACCATATCTTCTAGGATGGCATGCCTACGCCAATTCCATCAAGCCTGAAGATTCGATTCGTGTAAATAGCTCCAATTCTAGGTATGGCGACTACGAATGGAACAAGTAG 960 45.52 MIFFTTTGRKLIFLHKYSFLPLKKQSPPIERSEETMQRLHLLSSSSSSSFAAPQNPETCPFLKLSSNYPSRSFFLNFNAYRPLPTHSTSWKLSVKCRYSEYFDQQQKKQSGFDAGTSPNNNSAPQSRPGAAGALSTRYFVGHSIYKGKAALTVEPRAPEFTSLDSGAFKLSKEGVVVLQFAPAAGVRQYDWSKKQVFSLSVTEIGSLVALGPRDSCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNISVQNKLINMDESIYIPVTKAEYAVLVSAFNFILPYLLGWHAYANSIKPEDSIRVNSSNSRYGDYEWNK 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 35667034 35669699 + Bma023625.1 Bma06g00662 84164

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00662 319 SUPERFAMILY ssDNA-binding transcriptional regulator domain 136 317 IPR009044 GO:0003677|GO:0006355
Bma06g00662 319 MobiDBLite consensus disorder prediction 109 129 - -
Bma06g00662 319 Gene3D Transcriptional Coactivator Pc4; Chain A 129 301 IPR009044 GO:0003677|GO:0006355
Bma06g00662 319 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 57 318 IPR013742 GO:0003697|GO:0006355|GO:0006952
Bma06g00662 319 MobiDBLite consensus disorder prediction 109 130 - -
Bma06g00662 319 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 57 318 - -
Bma06g00662 319 Pfam Whirly transcription factor 144 278 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00662 - - - mnt:112091579 373.629
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00662 Bma-Chr6:35667034 Bma06g00672 Bma-Chr6:36008831 0 dispersed
Bma06g00662 Bma-Chr6:35667034 Bma04g00341 Bma-Chr4:2765923 2.14E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g860 . . . Bda11g01231 Bpe13g01428 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0609 Cone9ag0613 . . . . . . . Bda11g01231 . . . Bma06g00662 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma06g00672 . 6 281 Whirly Transcription Factor Family AT1G14410 63.9 4.1e-97 351.3
Bma06g00662 . 46 319 Whirly Transcription Factor Family AT1G14410 63.3 1.7e-95 345.9
Bma06g00662 . 91 319 Whirly Transcription Factor Family AT2G02740 69.3 2.2e-90 328.9
Bma06g00672 . 53 281 Whirly Transcription Factor Family AT2G02740 69.3 2.9e-90 328.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007539 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57462 PF08536 Whirly 6.70E-61 CL0609 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00662 Bma_Chr06 FPKM 18.544466 18.776186 24.861858 24.631294 40.650826 50.488022 43.767262 27.745432 26.857347 28.228973