Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00672 ATGCAGCGGCTACACTTGCTATCTTCTTCTTCATTTGCTGCTCCTCAAAACCCTGAAACTTGTCCTTTCCTTAAGCTTTCCTCCAACTATCCGTCTAGAAGCTTCTTTCTCAATTTCAATGCCTACAGGCCTCTTCCAACGCACTCCACAAGCTGGAAGCTCTCTGTGAAATGCCGGTACTCTGAGTACTTCGACCAGCAGCAGAAGAAGCAGTCGGGATTCGACGCCGGAACTTCTCCGAATAACAATTCTGCTCCACAGTCTCGGCCTGGAGCTGCTGGAGCGTTGCCAACTAGGTACTTCGTGGGTCATTCAATATACAAAGGGAAGGCAGCTCTTACGGTGGAGCCACGGGCGCCAGAGTTTACTTCTCTAGATTCAGGAGCGTTCAAACTATCAAAGGAGGGCGTTGTTGTTCTTCAGTTTGCTCCCGCAGCTGGTGTTCGTCAATATGATTGGGGCAAAAAACAGGTATTCTCTTTGTCAGTGACAGAAATTGGGAGTCTTGTTGCCCTTGGCCCAAGAGATTCGTGTGAATTTTTCCACGACCCTTTTAAGGGAAAAAGTGAGGAAGGGAAAGTTAGGAAGGTATTGAAAGTGGAGCCCCTTCCAGATGGTTCTGGTCATTTCTTCAACATCAGTGTTCAGAACAAGCTTATCAACATGGACGAGAGTATTTATATTCCTGTCACCAAAGCAGAATTCGCTGTACTTGTCTCAGCATTCAATTTTATCTTACCATATCTTCTAGGATGGCATGCCTACGCCAATTCCATCAAGCCTGAAGATTCGATTCGTGTAAATAGCTCCAATTCTAGGTATGGCGACTACGAATGGAACAAGTAG 846 46.22 MQRLHLLSSSSFAAPQNPETCPFLKLSSNYPSRSFFLNFNAYRPLPTHSTSWKLSVKCRYSEYFDQQQKKQSGFDAGTSPNNNSAPQSRPGAAGALPTRYFVGHSIYKGKAALTVEPRAPEFTSLDSGAFKLSKEGVVVLQFAPAAGVRQYDWGKKQVFSLSVTEIGSLVALGPRDSCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNISVQNKLINMDESIYIPVTKAEFAVLVSAFNFILPYLLGWHAYANSIKPEDSIRVNSSNSRYGDYEWNK 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 36008831 36011393 + Bma023641.1 Bma06g00672 84174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00672 281 Gene3D Transcriptional Coactivator Pc4; Chain A 91 263 IPR009044 GO:0003677|GO:0006355
Bma06g00672 281 MobiDBLite consensus disorder prediction 71 89 - -
Bma06g00672 281 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 48 280 IPR013742 GO:0003697|GO:0006355|GO:0006952
Bma06g00672 281 SUPERFAMILY ssDNA-binding transcriptional regulator domain 99 279 IPR009044 GO:0003677|GO:0006355
Bma06g00672 281 MobiDBLite consensus disorder prediction 71 92 - -
Bma06g00672 281 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 48 280 - -
Bma06g00672 281 Pfam Whirly transcription factor 106 240 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00662 Bma-Chr6:35667034 Bma06g00672 Bma-Chr6:36008831 0 dispersed
Bma06g00672 Bma-Chr6:36008831 Bma04g00341 Bma-Chr4:2765923 2.18E-24 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57464 PF08536 Whirly 2.80E-61 CL0609 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00672 - - mnt:112091579 377.096