Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00672 ATGCAGCGGCTACACTTGCTATCTTCTTCTTCATTTGCTGCTCCTCAAAACCCTGAAACTTGTCCTTTCCTTAAGCTTTCCTCCAACTATCCGTCTAGAAGCTTCTTTCTCAATTTCAATGCCTACAGGCCTCTTCCAACGCACTCCACAAGCTGGAAGCTCTCTGTGAAATGCCGGTACTCTGAGTACTTCGACCAGCAGCAGAAGAAGCAGTCGGGATTCGACGCCGGAACTTCTCCGAATAACAATTCTGCTCCACAGTCTCGGCCTGGAGCTGCTGGAGCGTTGCCAACTAGGTACTTCGTGGGTCATTCAATATACAAAGGGAAGGCAGCTCTTACGGTGGAGCCACGGGCGCCAGAGTTTACTTCTCTAGATTCAGGAGCGTTCAAACTATCAAAGGAGGGCGTTGTTGTTCTTCAGTTTGCTCCCGCAGCTGGTGTTCGTCAATATGATTGGGGCAAAAAACAGGTATTCTCTTTGTCAGTGACAGAAATTGGGAGTCTTGTTGCCCTTGGCCCAAGAGATTCGTGTGAATTTTTCCACGACCCTTTTAAGGGAAAAAGTGAGGAAGGGAAAGTTAGGAAGGTATTGAAAGTGGAGCCCCTTCCAGATGGTTCTGGTCATTTCTTCAACATCAGTGTTCAGAACAAGCTTATCAACATGGACGAGAGTATTTATATTCCTGTCACCAAAGCAGAATTCGCTGTACTTGTCTCAGCATTCAATTTTATCTTACCATATCTTCTAGGATGGCATGCCTACGCCAATTCCATCAAGCCTGAAGATTCGATTCGTGTAAATAGCTCCAATTCTAGGTATGGCGACTACGAATGGAACAAGTAG 846 46.22 MQRLHLLSSSSFAAPQNPETCPFLKLSSNYPSRSFFLNFNAYRPLPTHSTSWKLSVKCRYSEYFDQQQKKQSGFDAGTSPNNNSAPQSRPGAAGALPTRYFVGHSIYKGKAALTVEPRAPEFTSLDSGAFKLSKEGVVVLQFAPAAGVRQYDWGKKQVFSLSVTEIGSLVALGPRDSCEFFHDPFKGKSEEGKVRKVLKVEPLPDGSGHFFNISVQNKLINMDESIYIPVTKAEFAVLVSAFNFILPYLLGWHAYANSIKPEDSIRVNSSNSRYGDYEWNK 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 36008831 36011393 + Bma023641.1 Bma06g00672 84174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00672 281 Gene3D Transcriptional Coactivator Pc4; Chain A 91 263 IPR009044 GO:0003677|GO:0006355
Bma06g00672 281 MobiDBLite consensus disorder prediction 71 89 - -
Bma06g00672 281 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 48 280 IPR013742 GO:0003697|GO:0006355|GO:0006952
Bma06g00672 281 SUPERFAMILY ssDNA-binding transcriptional regulator domain 99 279 IPR009044 GO:0003677|GO:0006355
Bma06g00672 281 MobiDBLite consensus disorder prediction 71 92 - -
Bma06g00672 281 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 48 280 - -
Bma06g00672 281 Pfam Whirly transcription factor 106 240 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00672 - - - mnt:112091579 377.096
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00662 Bma-Chr6:35667034 Bma06g00672 Bma-Chr6:36008831 0 dispersed
Bma06g00672 Bma-Chr6:36008831 Bma04g00341 Bma-Chr4:2765923 2.18E-24 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma06g00672 . 6 281 Whirly Transcription Factor Family AT1G14410 63.9 4.1e-97 351.3
Bma06g00662 . 46 319 Whirly Transcription Factor Family AT1G14410 63.3 1.7e-95 345.9
Bma06g00662 . 91 319 Whirly Transcription Factor Family AT2G02740 69.3 2.2e-90 328.9
Bma06g00672 . 53 281 Whirly Transcription Factor Family AT2G02740 69.3 2.9e-90 328.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007539 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57464 PF08536 Whirly 2.80E-61 CL0609 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00672 Bma_Chr06 FPKM 8.323326 8.251557 22.796772 27.015703 6.536303 6.274868 9.920245 9.939967 9.649191 13.01749