Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00675 ATGACTAGCAATTGGATGGCTTTCTTCCCTGCAAATTTCATGCCACAAGCTCCCCATGAAGATGAACATCAGCCTCCCTCTACTCTTAACCCTATTCTTCACCCATGTACTCCTCAAGACCTTCATGGAGTGGCATCGTTTCTAGGAAAGAGATCCATGTCGTTTTCGGGAATTGAAATGGGGGAAGAAGCAAACAATGGGGAGGACGATTTGTCGGACGATGGATCACTTGCAGGAGAGAAGAAGAGGAGGCTTAATATGGAGCAGGTGAAAACTCTTGAGAAGAACTTCGAGCTGGGAAATAAGCTGGAGCCCGAGAGAAAAATGCAGTTGGCTCGAGCTCTTAATCTGCAGCCACGGCAGATTGCGATTTGGTTTCAGAACAGAAGAGCAAGGTGGAAGACGAAGCAGTTGGAGAAAGATTATGATCTTCTCAAACGACAGTTTGAAGCCATTAAAGCCGATAACGAAGCTCTACAAACCCAGAATCAAAAACTTCAGGCAGAGATTATGGGTCTGAAAAGTAGAGAACCAACCGAATCAATCAATCTGAACAAAGAAACAGAAGGATCATGCAGCAATCGGAGCGAGAACAGCTCCGACATAAAACTGGATATCTCCAGAACACCCGCCATTGATAGTCCTTTACCCACAAGCAGACCTTTATTTCCAGCCGCCATTAGAGCTCCCGCTGTCGCTCAGCTCTTTCAGAACCCATCGAGATCTGAACTTCATTGCCATAAAGTAGATCAAATGGGCAAAGAAGAAAGCCTGAGCAACATGTTTTGCGGGATCGAGGATCAATCCGGTGGACTGTGGCCATGGTTGGAGAATCAACATTTTAATTGA 849 45.7 MTSNWMAFFPANFMPQAPHEDEHQPPSTLNPILHPCTPQDLHGVASFLGKRSMSFSGIEMGEEANNGEDDLSDDGSLAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALNLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKADNEALQTQNQKLQAEIMGLKSREPTESINLNKETEGSCSNRSENSSDIKLDISRTPAIDSPLPTSRPLFPAAIRAPAVAQLFQNPSRSELHCHKVDQMGKEESLSNMFCGIEDQSGGLWPWLENQHFN 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 36232778 36233992 - Bma023646.1 Bma06g00675 84177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00675 282 MobiDBLite consensus disorder prediction 184 202 - -
Bma06g00675 282 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
Bma06g00675 282 Gene3D - 74 142 - -
Bma06g00675 282 Pfam Homeobox associated leucine zipper 136 176 IPR003106 GO:0006355|GO:0043565
Bma06g00675 282 Coils Coil 128 176 - -
Bma06g00675 282 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Bma06g00675 282 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 4 282 IPR045224 GO:0003700
Bma06g00675 282 SMART HOX_1 79 140 IPR001356 GO:0003677
Bma06g00675 282 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 4 282 - -
Bma06g00675 282 SUPERFAMILY Homeodomain-like 78 138 IPR009057 -
Bma06g00675 282 MobiDBLite consensus disorder prediction 172 202 - -
Bma06g00675 282 CDD homeodomain 81 137 IPR001356 GO:0003677
Bma06g00675 282 Pfam Homeodomain 81 134 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma06g00675 Bma14g01636 CCT
Bma06g00675 Bma14g01636 ECH
Bma01g00088 Bma06g00675 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00675 Bma-Chr6:36232778 Bma14g01636 Bma-Chr14:34559003 1.58E-125 dispersed
Bma01g00088 Bma-Chr1:994635 Bma06g00675 Bma-Chr6:36232778 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57465 PF00046 Homeodomain 6.80E-15 CL0123 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00675 K09338 - qsu:112032056 463.381