Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00679 ATGGCTGATAATCAAAGAAGTGGTCCCGCGCAGAGAGATATAGAGCAGGCCATTACAGCTCTTAAGAAAGGCGCATATTTGTTGAAGTATGGACGAAGAGGAAAGCCAAAGTTCTGCCCGTTCAGACTTTCAAATGATGAATCTTTACTCATATGGTACTCTGGAAAGGAAGAGAAACACCTAAAAATAAGCCATGTTTCAAAGATTATTCCTGGACAATGCACTGCAATATTCCAGCAGTATCCTCGGCCAGAAAAGGAGTATCAGTCCTTTTCACTTTTATATGGTGATAGGTCCCTTGATTTGATTTGTAAAGACAAGGATGAGGCTGAAGTTTGGTTTGTTGGTCTTAAGGCATTAATTAATCGAGGAAACCTCCGCAGGTGGAGAAGTGATTATAGATGTAACAGTGTTTCATCAGATAGTCCACATACTCGTACCAAAAGAAATTCTCCTTCGATTACTCCATTTGATCCTGGAGATACTGAAGGGAATCATTTTGAGAACATTTCACAAAGTAGACTAGGAAAAGCATTTTCTGAAATATTAACATATACTGCTGTTACCAGAAGTATCAGTCAGCCTGAATTGATCACCAATCCCTCTCTTTCAGCTGGGTCTGTAGATAACTCAAATGGGAGAAGTTCTGCATCAGACGGGTTTCGGATTAGTTTATCTAGTGCAGTAAGTTCTTCGAGCCAAGGTTCTTGTCCTGAAGATTTTGACGCCTTAGGTGATGTATTCATCTGGGGAGAAGGTATTGAGGCAGGATTGCTGGGGGGTGGCTTGCATAGAGTTGGGAGTTCAACTGATTCCAAGATGGATGCTCTTCTACCTAAGGCGTTGGAGTCATCAATGGTTTTAGATATCCATGGCATTGCTTGTGGTAGTAGACATGCTGTGATAGTCACCAGACGAGGAGAGGTTTTCAGTTGGGGAGAGGAGTCAGGAGGGAGGCTTGGACATGGTGTAGATGCTGATGTTTCTCATCCAAAGATCATTAACAGTCTTAGTGGCATGAATATTGAATCAGTAGCTTGTGGGGAGTATCACACATGTGCTGTTACGTATTCAGGGGACCTTTACACATGGGGAGGTGGAACTCACCCTTTCGGTCTGCTTGGCCATGGTAGCGAAGTTAGTCATTGGATTCCGAAAAAAGTATGTGGTCGTATGGAGGATATACATGTTTCGTATATTTCTTGTGGTCCTTGGCATACAGCTGTAGTGACATCTGCCGGGCAGTTATTCACATTTGGGGATGGATCATTTGGTGCTCTCGGACATGGCAATCGTAGTAACATAAATACCCCGCGAGAAGTAGAAACTTTAAGAGGTCAAAGAATAACAAGAGTTTCTTGTGGTGTTTGGCATACTGCTGCTGTTGTCGAAGTAATTAATGAATCATCTAGCTCTGTTTCAGGTAAGTTTACATCTGGAAAACTGTTCACCTGGGGGGATGGAGATAAAGGACGTCTTGGGCATGGCGATAAAGAAACTAGACTAGTTCCTGAATGTGTAGTTGCATTAGCGAGTGAAAATGTTTGTCAGACTGCATGTGGTCTCAATCTCACTGTTGTTCTGACAACTTCAGGACAAGTATATACAATGGGAAGTGCCACTTATGGACAGTTGGGCAGTCCTATGGCTGATGGGATGATTCCCATGCGCGTAGAAGGGAACCTTTCCAACAATTTTGTTGAAGCGATTTCATGTGGTTCTTATCATACTGCAGTTTTGACTTCCAAAGCTGAGGTTTATACTTGGGGAAAAGGTTCGAATGGACAACTAGGCCATGGGGATAATGATCATAGAAATACGCCAACTGTAGAAAGTCTTACTTGCCAATCCCAAAATCTCGAAGCAGAGCTTGCAAGAACATCAAGGCAACTGAAAGAAGTCACTATGGTAGCTGCAGATGAGGCAGAAAAATGTAAATCTGCTAAAGAAGTTATCAAATCTCTTACTTCTCAGTTGAAAGAGATGGCTGAAAGACTACCAGAAGAACAGACAGGTCAGCTCACTGTCAATCTAAATACCCTTGCGACAGAGAGCAATTCTATGAGCATGAACACTGATGCCAGGTCTAATGGCAACTTAACACATCCACCAAATGGAGGAGAAACTCAATCTGGAAAGGGAGAATCGGTGATACAAGATGAACCAGGCGTATACATAACTTTGTCCCCTCTGCCAGATGGTGGCTGTGAGCTCAAACGTGTGCGCTTCAGTCGGAGACGTTTCACAGAAGAACAAGCAGAAAAATGGTGGACAGAAAATGGAGCAAAAGTCTGTGAAAGGCACAACATTCGGAGTACCGACTGA 2325 43.01 MADNQRSGPAQRDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESLLIWYSGKEEKHLKISHVSKIIPGQCTAIFQQYPRPEKEYQSFSLLYGDRSLDLICKDKDEAEVWFVGLKALINRGNLRRWRSDYRCNSVSSDSPHTRTKRNSPSITPFDPGDTEGNHFENISQSRLGKAFSEILTYTAVTRSISQPELITNPSLSAGSVDNSNGRSSASDGFRISLSSAVSSSSQGSCPEDFDALGDVFIWGEGIEAGLLGGGLHRVGSSTDSKMDALLPKALESSMVLDIHGIACGSRHAVIVTRRGEVFSWGEESGGRLGHGVDADVSHPKIINSLSGMNIESVACGEYHTCAVTYSGDLYTWGGGTHPFGLLGHGSEVSHWIPKKVCGRMEDIHVSYISCGPWHTAVVTSAGQLFTFGDGSFGALGHGNRSNINTPREVETLRGQRITRVSCGVWHTAAVVEVINESSSSVSGKFTSGKLFTWGDGDKGRLGHGDKETRLVPECVVALASENVCQTACGLNLTVVLTTSGQVYTMGSATYGQLGSPMADGMIPMRVEGNLSNNFVEAISCGSYHTAVLTSKAEVYTWGKGSNGQLGHGDNDHRNTPTVESLTCQSQNLEAELARTSRQLKEVTMVAADEAEKCKSAKEVIKSLTSQLKEMAERLPEEQTGQLTVNLNTLATESNSMSMNTDARSNGNLTHPPNGGETQSGKGESVIQDEPGVYITLSPLPDGGCELKRVRFSRRRFTEEQAEKWWTENGAKVCERHNIRSTD 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 36414739 36421901 - Bma023655.2 Bma06g00679 84181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00679 774 Gene3D - 210 474 IPR009091 -
Bma06g00679 774 Gene3D - 475 654 IPR009091 -
Bma06g00679 774 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 359 413 IPR000408 -
Bma06g00679 774 PRINTS Chromosome condensation regulator RCC1 signature 309 325 IPR000408 -
Bma06g00679 774 PRINTS Chromosome condensation regulator RCC1 signature 579 600 IPR000408 -
Bma06g00679 774 PRINTS Chromosome condensation regulator RCC1 signature 400 416 IPR000408 -
Bma06g00679 774 PRINTS Chromosome condensation regulator RCC1 signature 521 539 IPR000408 -
Bma06g00679 774 PRINTS Chromosome condensation regulator RCC1 signature 290 303 IPR000408 -
Bma06g00679 774 PRINTS Chromosome condensation regulator RCC1 signature 359 375 IPR000408 -
Bma06g00679 774 PRINTS Chromosome condensation regulator RCC1 signature 416 430 IPR000408 -
Bma06g00679 774 SUPERFAMILY RCC1/BLIP-II 244 613 IPR009091 -
Bma06g00679 774 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 584 609 IPR000408 -
Bma06g00679 774 CDD PH_PLC_plant-like 12 122 - -
Bma06g00679 774 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 14 610 - -
Bma06g00679 774 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 610 768 - -
Bma06g00679 774 MobiDBLite consensus disorder prediction 136 158 - -
Bma06g00679 774 MobiDBLite consensus disorder prediction 136 168 - -
Bma06g00679 774 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 307 358 IPR000408 -
Bma06g00679 774 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 480 531 IPR000408 -
Bma06g00679 774 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 14 610 - -
Bma06g00679 774 Pfam Transcription factor regulating root and shoot growth via Pin3 715 768 IPR013591 -
Bma06g00679 774 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 570 580 IPR000408 -
Bma06g00679 774 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 610 768 - -
Bma06g00679 774 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 414 465 IPR000408 -
Bma06g00679 774 Coils Coil 645 665 - -
Bma06g00679 774 MobiDBLite consensus disorder prediction 688 716 - -
Bma06g00679 774 Gene3D - 13 127 IPR011993 -
Bma06g00679 774 Pfam Transcription factor BRX N-terminal domain 640 667 IPR027988 -
Bma06g00679 774 Pfam Regulator of chromosome condensation (RCC1) repeat 531 580 IPR000408 -
Bma06g00679 774 Pfam Regulator of chromosome condensation (RCC1) repeat 358 410 IPR000408 -
Bma06g00679 774 Pfam Regulator of chromosome condensation (RCC1) repeat 414 462 IPR000408 -
Bma06g00679 774 Pfam Regulator of chromosome condensation (RCC1) repeat 307 355 IPR000408 -
Bma06g00679 774 Pfam Regulator of chromosome condensation (RCC1) repeat 479 528 IPR000408 -
Bma06g00679 774 Pfam Regulator of chromosome condensation (RCC1) repeat 585 609 IPR000408 -
Bma06g00679 774 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 452 462 IPR000408 -
Bma06g00679 774 ProSiteProfiles BRX domain profile. 714 769 IPR013591 -
Bma06g00679 774 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 245 306 IPR000408 -
Bma06g00679 774 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 532 583 IPR000408 -
Bma06g00679 774 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 400 410 IPR000408 -
Bma06g00679 774 SUPERFAMILY PH domain-like 13 121 - -
Bma06g00679 774 Coils Coil 610 637 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00679 - - - csv:101222790 956.051
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00679 Bma-Chr6:36414739 Bma14g00757 Bma-Chr14:8409331 0 dispersed
Bma09g00447 Bma-Chr9:38385107 Bma06g00679 Bma-Chr6:36414739 4.32E-26 dispersed
Bma15g00766 Bma-Chr15:15856068 Bma06g00679 Bma-Chr6:36414739 2.78E-20 dispersed
Bma06g00679 Bma-Chr6:36414739 Bma07g01382 Bma-Chr7:49585386 7.72E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g890 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma06g00679 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008880 1 4 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00679 Bma_Chr06 FPKM 78.825966 86.18103 73.260704 71.946754 123.808304 129.436127 126.082291 96.194717 105.118744 96.009567