Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00694 ATGGGTCTTTGCAGGAAAATGGCAGTGTCTGGTTTTCTCGTAGTGTGCTTTCTCTTGTCACTTTCCTCCGCCAATGGCTATGGCGGAGAAGGCTGGATTGACGCCCACGCCACCTTCTACGGCGGAAGCGATGCCTCAGGAACAATGGGCGGGGCTTGTGGGTACGGAAACCTCTACAGCCAAGGCTATGGCACAAACACAGCAGCTCTAAGCACCGCTCTGTTCAACAGCGGACTGAGCTGCGGCTCTTGCTACGAGATCAGATGCACCGGCGACCGGAAATGGTGCCTTTCTGGCTCGATTGTGGTGACGGCGACCAACTTTTGCCCGCCCAATAATGCACTTCCTAACGACGCCGGCGGCTGGTGCAACCCGCCCAGGCACCATTTTGACCTTTCTCAGCCTGTTTATCAACACATTGCGCAGTACAGAGCTGGAATAGTCCCAGTTTCGTACAGAAGGGTACCCTGCAGAAGAAGGGGAGGGATCCGATTCACCATTAACGGCCACTCCTACTTCAACCTGGTTCTGATCACAAACGTGGGCGGCGCCGGCGACGTCCATGCAGTTTCCGTCAAAGGTTCCAGAACCGGTTGGCAGCCAATGTCAAGAAACTGGGGCCAAAACTGGCAGAGCAACTCCTACCTTACCGGACAGACCCTTTCGTTCAAAGTCACCACCAGCGACGGCCGGAGCGTAATGTCCTACAACGTTGCCCCGGCCGGCTGGTCCTTCGGGCAGACCTATAGTGGGGCTCAATTTAACTAG 768 55.86 MGLCRKMAVSGFLVVCFLLSLSSANGYGGEGWIDAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGSCYEIRCTGDRKWCLSGSIVVTATNFCPPNNALPNDAGGWCNPPRHHFDLSQPVYQHIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSVKGSRTGWQPMSRNWGQNWQSNSYLTGQTLSFKVTTSDGRSVMSYNVAPAGWSFGQTYSGAQFN 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 36989179 36990331 + Bma023673.1 Bma06g00694 84196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00694 255 Pfam Lytic transglycolase 67 152 IPR009009 -
Bma06g00694 255 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Bma06g00694 255 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Bma06g00694 255 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Bma06g00694 255 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Bma06g00694 255 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Bma06g00694 255 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Bma06g00694 255 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Bma06g00694 255 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Bma06g00694 255 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Bma06g00694 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Bma06g00694 255 PANTHER EXPANSIN-A15 12 254 IPR002963 GO:0009664
Bma06g00694 255 SUPERFAMILY PHL pollen allergen 159 250 IPR036749 -
Bma06g00694 255 Gene3D - 20 158 IPR036908 -
Bma06g00694 255 Gene3D - 162 254 IPR036749 -
Bma06g00694 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 162 IPR007112 -
Bma06g00694 255 PANTHER EXPANSIN 12 254 - -
Bma06g00694 255 SMART dpbb_1 67 152 IPR007112 -
Bma06g00694 255 SUPERFAMILY Barwin-like endoglucanases 15 180 IPR036908 -
Bma06g00694 255 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Bma06g00694 255 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Bma06g00694 255 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Bma06g00694 255 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Bma06g00694 255 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Bma06g00694 255 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Bma06g00694 255 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00694 Bma-Chr6:36989179 Bma13g00150 Bma-Chr13:1581215 1.39E-142 dispersed
Bma06g00694 Bma-Chr6:36989179 Bma06g00699 Bma-Chr6:37211612 0 proximal
Bma15g00149 Bma-Chr15:1543263 Bma06g00694 Bma-Chr6:36989179 1.28E-154 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00694 - - pop:7481578 462.225