Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00696 ATGCAGAATCAGTACGTGAAATTGGTCTTATCCACTGATGCAAAACCCAGGTTGAAATGGACTGCAGAGCTTCATCAGAGATTTGTAGAAGCTGTTATTCAGCTTGGAGGGGCAGAGAAGGCCACTCCGAAGAGTTTGATGAGGGTGATGGGTATTAATGGATTGACTTTATACCACCTGAAGAGCCATTTACAGAAATTCAGGCTGGTAAGAAGTCAACAGCCGGAAACCAGCTCCGACCATCTGGAAGATTACAAAGAAGTTCATGGAAGTGATGGCCATCTTAATGGAGATTCAAATGATGGGTCTCAGAATCAGATTAGCGACAAAAAGATTTCTCAAGCTCTGCAACTGCAATTAGAGGTCCAAAGGAAATTACACGAGCAGATTGAGGTTCAGAGGCATTTGCAGCTGAGAATTGAAGCTCAGGGAAAGTATTTACAGTCGGTTCTAAAAAAAGCACAAGAAACACTAGCCGGGTATTCTTCTTCTTCTTCTTCTTCGCCTTCTCCGGGAGTAGAGCTAGCCAAACAGAAACTCTCTCAGCTAGTCTCGATGGTAAAAAATGGCGGACCAAGTTCTTCACTTTCAGAACTAACAGAAATGGAAGGACTGAGAGGGACAATGCAGTCCATTGAAAGCTCCTTAACTTCATCAGAAAGCTCGCCATCTGTTGAACTGTCATTAATGGAGATTTACAGAACAGATCAGCATTGTAATGGTCAGAAGAAGAGGAGTAGAAGCTTAACTTGTGAAGAAAATGGAGAAGATAAAGTTCGTAGTAAAAGATCACCGACAATTATGGAAGACGAGAAACTAATGCAAATGATTGACTTGAACAGTCGATTTGAGTACGATGATTTTGAGTTTTCTCCCAGAGAAATGGACTCAAATGGTTTGAAGCCAACGTAA 912 41.78 MQNQYVKLVLSTDAKPRLKWTAELHQRFVEAVIQLGGAEKATPKSLMRVMGINGLTLYHLKSHLQKFRLVRSQQPETSSDHLEDYKEVHGSDGHLNGDSNDGSQNQISDKKISQALQLQLEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSSSSPSPGVELAKQKLSQLVSMVKNGGPSSSLSELTEMEGLRGTMQSIESSLTSSESSPSVELSLMEIYRTDQHCNGQKKRSRSLTCEENGEDKVRSKRSPTIMEDEKLMQMIDLNSRFEYDDFEFSPREMDSNGLKPT 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 37096533 37098069 + Bma023675.2 Bma06g00696 84198

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00696 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 72 IPR017930 -
Bma06g00696 303 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 3 289 IPR044848 GO:0003700
Bma06g00696 303 Pfam MYB-CC type transfactor, LHEQLE motif 111 157 IPR025756 -
Bma06g00696 303 MobiDBLite consensus disorder prediction 87 106 - -
Bma06g00696 303 Gene3D - 14 72 - -
Bma06g00696 303 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL8 3 289 - -
Bma06g00696 303 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 15 69 IPR006447 GO:0003677
Bma06g00696 303 SUPERFAMILY Homeodomain-like 14 71 IPR009057 -
Bma06g00696 303 Pfam Myb-like DNA-binding domain 17 66 IPR001005 -
Bma06g00696 303 MobiDBLite consensus disorder prediction 238 266 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00696 - - - jre:108980862 298.13
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma06g00696 Bma14g01649 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00696 Bma-Chr6:37096533 Bma14g01649 Bma-Chr14:34968952 1.03E-65 dispersed
Bma06g00696 Bma-Chr6:37096533 Bma06g01283 Bma-Chr6:49912101 2.55E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g923 . . . Bda11g01213 . . Bma14g01649 . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0942 Cone6ag0578 Cone9ag0583 . . . . . Blo11g00775 Bda07g01469 Bda11g01213 Bpe11g01644 . . Bma06g00696 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004564 2 2 1 2 1 1 2 0 2 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57470 PF00249 Myb_DNA-binding 9.60E-06 CL0123 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00696 Bma_Chr06 FPKM 2.790754 3.638324 0.714013 0.928317 2.037253 0.966224 2.076714 0.626596 0.697808 1.259905