Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00701 ATGGAGGAACCGACCTCATCGATCTGTAACCTAGGTATTTTAGACAAACTCAGTGACCGCACAATTCAAGAGCTACTTCATAGCTACGACGGATTCTTCAAAACCACGGAGCATCTCTTAAATGGCGGTGCCGATCTTTCTGTGCATTCAGAGTTTGGGGCTCATGTCCACTCTCTATGCAGTTACGGCCTCGTCTCTCTGGTTTGCGATCACTTTCTTCGCACACTTGAGAAAAACTTCGAAAAGCAGGGGGCTTCCAGATTTTGGATGCATTTCCAGGCTTATGGAGATTCTTCGATTCTAATAAGCGATAACCCCATTAGCTCGAAGTATGAAGTTCAGGAAGTTCTATGCAAAGCTTTGGAAGAGATATCTTCGGAAAAGAAATTTCTGGAAGATTGTTTGTTGATACTGGTTGATTCTTTGCAGACATGGAAGGACAATGTATCAGAAGGAAATCACAGTTCACATGCAGAAAGATCATATCTCATGGCTAAGCTTCAGTACCTTATTTCCTCAGTCCTTATGGCTTCTCTTCCCCGCCATTTTCCAGACATACTACACTGGTACTTTAAAGGAAGATTGGAGGAGTTGAACACAATCATGGCAGGACATGAATCTCAAAGCGGGGACGACATGGATTTGGATAAAAAAAGTGAAAGTTTAAATTCAGATAAGTTGGATGATGATGATGATGATGAATTCCATCAGCAAGAGTACTCTGATGTCAGTAAATTAGCGAAGAACATTGGAAAGGTCGTTTTTGATCTTAGAAATCTCGGGTTTACATCTTTGGCGGAAGACGCCTACGCCTCTGCTATATTTTTGCTTCTAAAGGATAAAGTTCATGAACTTGCCAGTGATGATTATAGAAGTTCTATATTGGAGTCTATAAAAGAGTGGATTAAGGCTGTGCCCCTCCAGTTTCTATATGCCCTTCTCGCATATCTAGGAGAATCTGATAGTAAAGATAGTTCTTTGTCCGGTTTGAATTCGCCTTTAGCTACCAACTTGTCATCATCCTATTCTGGACTTGATACTTCTTCTGAAGTACTTGTGAGATGGCAGTTGCGATTGGAATATTTTGCTTATGAAACACTCCAAGATTTGAGAATAGCCAAACTGTTCGAAATAATAGTGGATTATCCTGAGAGCTCTCCCGCAATCGAAGATCTTAAGCAATGCCTTGAATATACCGGACAACACTCTAAGCTAGTTGAATCGTTCATCTCATCATTGCAATATCGCCTGCTCACTGCAGGTGCCTCAACGAATGATATATTGCATCAATATGTTTCGACAATTAGAGCACTCCGCACTATAGACCCAGCAGTGGTTTTTCTTGAAGCAGTTGGTGAACCGATAAGGGACTATTTAAGACGAAGAAAAGATACCATTAAATGCATTGTAACCATGCTAACTGATGGAACTGGAGGAAATCCAAATGCATCTGGAAATACAGGTGATAGCCTTCTTGAAGAATTAAACAAAGATGAAGAAAGTCAAGATAATACTGGTATTTACGATGACTTTCACACTGATGATAAGCAAGCTTGGATAAATTGTAGTCGCTGGGAGCCTGACCCTGTCGAAGCCGACCCATTGAAGGGTGGCAGGACTAGAAGGAAGGTTGACATACTTGGAATGCTTGTTAGTATAATCGGATCGAAAGACCAACTAGTCAATGAATATCGAGTTATGCTTGCCGAAAAGCTTCTGAACAAATCTGATTATGATATCGACTCAGAGATACGTACTCTAGAACTACTTAAGATACATTTTGGAGAAAGCAGTATGCAGAAATGTGAAATTATGCTGAATGATCTGATTGATTCGAAGAGGACCAACTCAAACATTAAAGCAACCATAAATAAACTTTCTAAGACAGCTGTTGAGCTCCAGGAAAGTGCTGCATCAATGGAAATGCTGGATGCAACAATCATATCTTCAAATTTCTGGCCTCCAATTCAGGATGAGAGCCTTACCCTACCTCCACAAATTGACAATCTGCTTTCTGATTATGCAAAGCGATTTAATGAAATCAAGACCCCTCGGAAGCTGCAGTGGAAGAAAAACTTGGGGACCGTGAAGTTGGAATTGCAATTTGAAGGAAGAGAAATACAGTTCACAGTTGCTCCAGTCCATGCTGCAATTATTATGCAATTTCAAAATCAAACAAGCTGGAGCTCCACAATTCTTGCAGCTGCTGTTGGTTTGCCTGCAGATATCCTCAACCGGAGGATAAATTTCTGGGTTAGTAAGGGAATCATTGCAGAATCACTTGGGGCAAACTCTAACGACCATGTCTATACGCTCGTGGAAAGCATGGGTGAGTCTAGTAAGAATGGTGCAAACCACGACAATTGCGATGGGGAGCTTTTAATAGGCGACGAGGAGGGAGAGAGATCCATCACTTCTGTGGAGGACCAGCTGCGCAAGGAAATGACTGTGTATGAGAAGTTTATCCTTGGTATGCTCACAAATTTCGGAAGCATGACGCTGGATCGAATCCACAATACTCTCAAGATGTTTTGTGTTGCCGACCCGTCCTACGATAAATCTCTCCAGCAGCTGCAAAGCTTTTTATCAGGGCTTGTTTCCGAAGAGAAGTTGGAGCTAAAAGATGGCTCCTACATCTTGAAGAAATAA 2649 41.53 MEEPTSSICNLGILDKLSDRTIQELLHSYDGFFKTTEHLLNGGADLSVHSEFGAHVHSLCSYGLVSLVCDHFLRTLEKNFEKQGASRFWMHFQAYGDSSILISDNPISSKYEVQEVLCKALEEISSEKKFLEDCLLILVDSLQTWKDNVSEGNHSSHAERSYLMAKLQYLISSVLMASLPRHFPDILHWYFKGRLEELNTIMAGHESQSGDDMDLDKKSESLNSDKLDDDDDDEFHQQEYSDVSKLAKNIGKVVFDLRNLGFTSLAEDAYASAIFLLLKDKVHELASDDYRSSILESIKEWIKAVPLQFLYALLAYLGESDSKDSSLSGLNSPLATNLSSSYSGLDTSSEVLVRWQLRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISSLQYRLLTAGASTNDILHQYVSTIRALRTIDPAVVFLEAVGEPIRDYLRRRKDTIKCIVTMLTDGTGGNPNASGNTGDSLLEELNKDEESQDNTGIYDDFHTDDKQAWINCSRWEPDPVEADPLKGGRTRRKVDILGMLVSIIGSKDQLVNEYRVMLAEKLLNKSDYDIDSEIRTLELLKIHFGESSMQKCEIMLNDLIDSKRTNSNIKATINKLSKTAVELQESAASMEMLDATIISSNFWPPIQDESLTLPPQIDNLLSDYAKRFNEIKTPRKLQWKKNLGTVKLELQFEGREIQFTVAPVHAAIIMQFQNQTSWSSTILAAAVGLPADILNRRINFWVSKGIIAESLGANSNDHVYTLVESMGESSKNGANHDNCDGELLIGDEEGERSITSVEDQLRKEMTVYEKFILGMLTNFGSMTLDRIHNTLKMFCVADPSYDKSLQQLQSFLSGLVSEEKLELKDGSYILKK 882
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 37241939 37248176 - Bma023681.1 Bma06g00701 84203

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00701 882 Coils Coil 616 636 - -
Bma06g00701 882 PANTHER BNAC04G32030D PROTEIN 14 882 - -
Bma06g00701 882 MobiDBLite consensus disorder prediction 209 225 - -
Bma06g00701 882 SMART APC2_2 821 880 IPR014786 -
Bma06g00701 882 SUPERFAMILY Cullin homology domain 521 773 IPR036317 -
Bma06g00701 882 SUPERFAMILY Winged helix DNA-binding domain 811 880 IPR036390 -
Bma06g00701 882 Pfam Cullin family 543 748 IPR001373 GO:0006511|GO:0031625
Bma06g00701 882 Pfam Anaphase promoting complex (APC) subunit 2 821 879 IPR014786 -
Bma06g00701 882 Gene3D Cullin; Chain C, Domain 2 642 781 - -
Bma06g00701 882 Gene3D - 797 882 IPR036388 -
Bma06g00701 882 Gene3D Cullin Repeats 489 626 - -
Bma06g00701 882 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 2 14 882 IPR044554 -
Bma06g00701 882 ProSiteProfiles Cullin family profile. 549 752 IPR016158 -
Bma06g00701 882 MobiDBLite consensus disorder prediction 206 233 - -
Bma06g00701 882 SMART cul_2 545 702 IPR016158 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00701 K03349 APC2, ANAPC2; anaphase-promoting complex subunit 2 - jre:109012996 1275.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00701 Bma-Chr6:37241939 Bma14g01429 Bma-Chr14:27281006 2.52E-09 dispersed
Bma06g00693 Bma-Chr6:36964709 Bma06g00701 Bma-Chr6:37241939 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g937 . Blo16g01110 . Bda11g01210 Bpe13g01404 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0944 Cone19ag0936 . . . . . . . . . Bda11g01210 . . . Bma06g00701 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010260 1 2 1 2 1 1 1 1 1 1 1 1 1 0 1 1 1 2 0 1 1 0 2 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00701 Bma_Chr06 FPKM 2.102273 0.0 2.862891 2.236337 1.614634 2.556117 1.398954 3.654702 1.887142 3.61986