Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00725 ATGGTTCGAGGCCTTTCAGTATGTAATCTTCAGGCCTCAAGAAATAATGGTGTTTATGGGTCAACCCCTTCATGGAGGAGTCATGTCAAGCTGATGAGGAATACTTTGATAACTTCTATGCTTTCCAGAAATTATATCTGGGGTAAATATGTACAGGGATGTTTCTTATCCAGCACACCCACAATGTTAAGACAGAGAAATTGTAGAGTTCAAGCTGGGTGGCTGTTCAAAGGGAGTGGACAAGGGTTGGATGCAAATTCTGAGCGTAGTGAGAGTGCTAATCAAGATATTTTGATCTTCTTTTTCCAGCTTGATCTGGAAACCCGAGTACAGTATGCCTTGAATCTGGAGCAATATGAAATTGCTCAACAACTGAGAAGCAAGATTACGGAGGTTGAAGCAGAAATAAGCAGACGGCTAGAATCAAAAAGAGGACTGTCTTCAAAGAGTGATGTGCAGGACAAAGTTTTAAGTATCATTCGGCTACGTGCAGATCTGCAGAATGCTATTGGCAGTGAAAATTATTCCTTGGCAGCTCAACTACGGGATGAAATTTCCAATTTGGAGGCAGAATCTCTTGCTGCGTCAGCAAAAGTTCTGGTATACGAAAATGCAAATTATTCATTTCGCCTTGGACAGAAAGTGAAGCACAAAATCTTCGGATATAAAGCTGTAGTTTGTGGAATGGATCCAGTGTGCTGTGAATCAAGCTCATGGAAGGAGGTTGCGCGTGTTGAAAAGTTGTCACGTGGTTCTAATCAGCCATTTTATCAGGTACAATTAGATAAATGTATTTGTGTTTTATATATATATTGTTTGAATTTGTTTTCTGATGCTTGTAAAACACAGGGCAGGTTTGATCATCCTTACACTTCGTTTTTATTTTATGGAGCGGATGCAACTGGTGACTTCATTCCGATCAAGCAACTGCGCGAGAAGTACAACCGGCCTCGACATGAAATACCGATGGATCTCGAAGACGGAGAACAAGGTGGTGAAACTTGA 1005 41.0 MVRGLSVCNLQASRNNGVYGSTPSWRSHVKLMRNTLITSMLSRNYIWGKYVQGCFLSSTPTMLRQRNCRVQAGWLFKGSGQGLDANSERSESANQDILIFFFQLDLETRVQYALNLEQYEIAQQLRSKITEVEAEISRRLESKRGLSSKSDVQDKVLSIIRLRADLQNAIGSENYSLAAQLRDEISNLEAESLAASAKVLVYENANYSFRLGQKVKHKIFGYKAVVCGMDPVCCESSSWKEVARVEKLSRGSNQPFYQVQLDKCICVLYIYCLNLFSDACKTQGRFDHPYTSFLFYGADATGDFIPIKQLREKYNRPRHEIPMDLEDGEQGGET 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 38214106 38216632 - Bma023710.3 Bma06g00725 84227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00725 334 SMART YccV_like_2_a 206 307 IPR011722 GO:0003677
Bma06g00725 334 Pfam UvrB/uvrC motif 159 190 IPR001943 GO:0005515
Bma06g00725 334 Coils Coil 178 198 - -
Bma06g00725 334 SUPERFAMILY YccV-like 207 299 IPR036623 GO:0003677
Bma06g00725 334 Gene3D - 205 301 IPR036623 GO:0003677
Bma06g00725 334 PANTHER SI:DKEY-261L7.2 87 329 - -
Bma06g00725 334 TIGRFAM yccV: hemimethylated DNA binding domain 207 304 IPR011722 GO:0003677
Bma06g00725 334 Pfam Hemimethylated DNA-binding protein YccV like 208 300 IPR011722 GO:0003677
Bma06g00725 334 PANTHER SI:DKEY-261L7.2 87 329 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00725 - - - jre:109002884 447.588
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g76 . . . Bda11g01189 Bpe13g01387 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0548 . . . . . . . . Bda11g01189 . . . Bma06g00725 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010259 2 3 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00725 Bma_Chr06 FPKM 17.994312 19.421671 10.215344 10.400703 14.371611 15.577353 13.84644 9.089817 7.771406 8.766454