Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00739 ATGGAACCATCCCAAAGTGTGGTTCTAACTTCGGAGTTTCTGGAACATAATTGTATGAATAACATGGGAATGTCAAATGTAGGAGGATATGAAAATCATCGGCCTGATCTACCAGCTCTTAAGAAGCGAGGTCATGGATGCCGTTCTTGGATAAAAATTGATCAGGATGGAAACTCAACAATATTGGAACTTGATAAGGCCACAATAATGAGGCATTGCTCCCTACCTTCTAGAGATCTTCGACTTTTGGATCCTATGTTCATTTATCCTTCTACAATACTGGGACGAGAGAAGGCGATTGTGGTCAGTCTTGAACAGATCAGATGTATAATCACTTCAAATGAGGTTGTTTTAATGAACTCCTTAGATGGATGTGTTGTACAGTACAGGTCGGAGTTGTCCAAGCGCCTCCAGACTTCTAAATATGAATCAGATGGTTTACCCTTTGAGTTTAAAGCCCTGGAGCTGGCTTTGGAGCTCACTTGCATGTCTCTAGATACTCAGGTAGTGAAGGAACTGGAAATGGAGATATATCCTGGCCTGGATGAACTTGCATTATCCATTAACACCCTTAACCTAGAACGGGTCCGAAGATTTAAAGGTCATCTCCTTGGATTGACCCAGCGTGTTCAAAAGGTTCGTGATGAAATTGAACATCTCATGGATGATGATGGTGATATGGCTAAGATGTATTTGACTGAGAAAAAAGAAAGGTTAGAGGGTTATAACCCAAATGACCTTTCCATTCAAACAAAGCGCAGATCAAAGTTGCTATCCAAATCTGCTCCCGTCTCGCCAGTTGGATCAATTAATCGAACCCAAAAACTGGAAAGGACTTTTAGTGTTGTTGTTAGTTCAAGCAGACATGGAAGCTCGATAAGTTCATCCAACAATGGAGAAAACATTGATCAACTAGAAATGCTACTTGAAGCCTACTTTGTCGGCATAGACAACACCCTCAACAAGTTATTATCGCTCAAGGAATGTATTGATGATACTGAAGATTTAATCAACATTAAACTGGATAATGTTCAGAACCACCTGATAAAATTTCAGCTACTTCTCACAGCAGCTACTTTCATGGCTACAATCTTTGCTGCGGTTACTGCAATTTTCGGTATGAATTTCACGGCTCAAATCTTTGATTCTCCAACTGCATTCAACTGGGTTTTAGCTGTAACTAGTAGCTTTTGTGGATTATTGTTTTTATCTTTCCAGATTTATTTTAGACATAAGAAATCTTTCCCATTG 1251 39.65 MEPSQSVVLTSEFLEHNCMNNMGMSNVGGYENHRPDLPALKKRGHGCRSWIKIDQDGNSTILELDKATIMRHCSLPSRDLRLLDPMFIYPSTILGREKAIVVSLEQIRCIITSNEVVLMNSLDGCVVQYRSELSKRLQTSKYESDGLPFEFKALELALELTCMSLDTQVVKELEMEIYPGLDELALSINTLNLERVRRFKGHLLGLTQRVQKVRDEIEHLMDDDGDMAKMYLTEKKERLEGYNPNDLSIQTKRRSKLLSKSAPVSPVGSINRTQKLERTFSVVVSSSRHGSSISSSNNGENIDQLEMLLEAYFVGIDNTLNKLLSLKECIDDTEDLINIKLDNVQNHLIKFQLLLTAATFMATIFAAVTAIFGMNFTAQIFDSPTAFNWVLAVTSSFCGLLFLSFQIYFRHKKSFPL 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 38397233 38399536 - Bma031294 Bma06g00739 84241

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00739 417 CDD Mrs2_Mfm1p-like 50 413 IPR039204 -
Bma06g00739 417 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 5 417 IPR039204 -
Bma06g00739 417 PANTHER MAGNESIUM TRANSPORTER MRS2-5 5 417 - -
Bma06g00739 417 Gene3D - 38 121 - -
Bma06g00739 417 Gene3D Magnesium transport protein CorA, transmembrane region 126 348 - -
Bma06g00739 417 Gene3D Magnesium transport protein CorA, transmembrane region 355 413 - -
Bma06g00739 417 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 353 405 IPR045863 -
Bma06g00739 417 Coils Coil 203 223 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00739 K16075 MRS2, MFM1; magnesium transporter - zju:107429067 540.806
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00739 Bma-Chr6:38397233 Bma12g00023 Bma-Chr12:735368 1.23E-83 dispersed
Bma06g00739 Bma-Chr6:38397233 Bma13g00660 Bma-Chr13:16386481 9.81E-155 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g36 . Blo16g01085 . Bda11g01176 Bpe13g01373 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0537 . . . . . . . Bda11g01176 . . . Bma06g00739 . . . . . . . . Cpe07g00089 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma13g00660 . 1 443 MRS2 Gene Family AT1G16010 82.7 1.4e-198 689.1
Bma06g00739 . 36 417 MRS2 Gene Family AT1G16010 56.7 1.4e-113 406.8
Bma12g00007 . 1 498 MRS2 Gene Family AT3G19640 62.2 5.3e-151 531.2
Bma12g00023 . 1 447 MRS2 Gene Family AT3G58970 63.6 3.6e-143 505.0
Bma06g00739 . 26 417 MRS2 Gene Family AT2G03620 66.8 4.3e-133 471.5
Bma13g00660 . 13 443 MRS2 Gene Family AT2G03620 52.5 1.5e-109 393.3
Bma12g00023 . 62 446 MRS2 Gene Family AT4G28580 50.5 4.0e-91 332.0
Bma13g00660 . 50 379 MRS2 Gene Family AT5G09690 51.1 2.6e-74 275.8
Bma13g00660 . 1 443 MRS2 Gene Family AT1G80900 82.4 4.4e-197 684.1
Bma06g00739 . 36 417 MRS2 Gene Family AT1G80900 57.0 2.1e-114 409.5
Bma07g01468 . 121 460 MRS2 Gene Family AT5G22830 81.5 2.6e-155 545.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008212 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 4 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00739 Bma_Chr06 FPKM 0.930025 1.016077 0.87247 1.400744 4.135364 3.401817 4.775257 2.931326 2.609703 2.920729