Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00740 ATGGCATCTGAAATGGTTTATCCATTTCCCCTTCCAGAGAATGTGGGCAGTAATTTTGTGGAGCAGTATTATAACATTCTTCACTACTTCCCCGAGGAGGCTTACAAATTCTATAAGGATTCTAGTGTTCTTACCCGACCTGGTCCAGATGGAAAGATGATGACGGTGACCGCCATGCAAGGAATCAATGACATGATACTCTCTCTGGACTACAAGAACAGTGACTTTGAAATATCGACGATAGATACTCAGCGTTCATTCAATGGCGGGGTGGTTATCATGGTGACTGGTTATTTAACTGGGAAAGACAACCTTAAAAGGATATTTTCCCAAGTGTTCTTTCTAGCCCCACAAGAAACCGGTTTGTTCGTCTTAAATGACATCTTCAACTATTTCGATCAATGTGCTGACGGCAGTGTTGATGCTGGCAATGTTGTCGAAAGTGATCCGGAATCTCCGAAGACACCAGATCCTGTTGAAACCAACGATGGGTTCAAATCTGATCATTCTCCAGAAAATAAAAACCCTCCATTGGTAGAAGTTGCTGAGGGGGGGCAGACCACTGTTCATCTATTGGAAAATAGAAAAGAATCAACTGATGAAATTGGTCTTGTTAGAGAAGATCCGGTCGTGGTTAAGACTGAGGAGATTCCTGCTGCCACAGAGACAACTGCTCCGACCATTTTGGAGGATGCTCCGAAAAAATCTTTTGCAACTTTGGTCAATGCTCTGAATGGTAATGCTACTCCATTTCAGAGGGTTTCACCTGCTAAGCCTGCAGGAAAGCCACAGATTCCTTCAGCACCCAAATTATCGTCTCAGAAAATCGGGGCTGTTGTCAACAAGACTAATATGCCCGCAGTCAATACTCATGCTATCTTTGTTCCAAACTTGCCCATGAGTGCTACTGTTGAAGAACTTGAAAAGCTATTTATGAAGTTTGGTTCCATCAAGCCTAATGGCACTCAAGTTAGGAGTAAGCAGTATCAGGGATCCTGCTTTGGGTTTGTGGAGTTTGAATCAGCAACATCAATGCAAAATGCGCTCAAGGCTTCCCCTATCTTGTTTGGCAACCGAAAACTTTTCATCGAAGAAAGACGAGCGGAAAGTAAAGACGGAGGGAGATATTCATCCGCCAATGGTGGCTACAGAAACAATAACTATTGGCCTCGGGGGAATTTTAGCGAGAGGAACAGCAATGGACAGCGTCAGGGTCGAGAGTTTGTCGGTCGATCGCGAGGAAATATTGTACAAAACGGAGAAGCTAATACTCGGAGGTTTCAATGA 1287 43.9 MASEMVYPFPLPENVGSNFVEQYYNILHYFPEEAYKFYKDSSVLTRPGPDGKMMTVTAMQGINDMILSLDYKNSDFEISTIDTQRSFNGGVVIMVTGYLTGKDNLKRIFSQVFFLAPQETGLFVLNDIFNYFDQCADGSVDAGNVVESDPESPKTPDPVETNDGFKSDHSPENKNPPLVEVAEGGQTTVHLLENRKESTDEIGLVREDPVVVKTEEIPAATETTAPTILEDAPKKSFATLVNALNGNATPFQRVSPAKPAGKPQIPSAPKLSSQKIGAVVNKTNMPAVNTHAIFVPNLPMSATVEELEKLFMKFGSIKPNGTQVRSKQYQGSCFGFVEFESATSMQNALKASPILFGNRKLFIEERRAESKDGGRYSSANGGYRNNNYWPRGNFSERNSNGQRQGREFVGRSRGNIVQNGEANTRRFQ 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 38402609 38404919 - Bma023726.1 Bma06g00740 84242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00740 428 SUPERFAMILY RNA-binding domain, RBD 287 393 IPR035979 GO:0003676
Bma06g00740 428 MobiDBLite consensus disorder prediction 387 406 - -
Bma06g00740 428 MobiDBLite consensus disorder prediction 142 179 - -
Bma06g00740 428 MobiDBLite consensus disorder prediction 387 428 - -
Bma06g00740 428 MobiDBLite consensus disorder prediction 153 170 - -
Bma06g00740 428 SUPERFAMILY NTF2-like 13 131 IPR032710 -
Bma06g00740 428 Gene3D - 272 418 IPR012677 -
Bma06g00740 428 Gene3D - 4 136 - -
Bma06g00740 428 PANTHER BNAA02G14660D PROTEIN 8 425 - -
Bma06g00740 428 MobiDBLite consensus disorder prediction 251 270 - -
Bma06g00740 428 ProSiteProfiles Nuclear transport factor 2 domain profile. 15 131 IPR018222 -
Bma06g00740 428 SMART rrm1_1 292 364 IPR000504 GO:0003723
Bma06g00740 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 359 IPR000504 GO:0003723
Bma06g00740 428 Pfam Nuclear transport factor 2 (NTF2) domain 15 131 IPR002075 -
Bma06g00740 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 368 IPR000504 GO:0003723
Bma06g00740 428 CDD NTF2 12 131 IPR018222 -
Bma06g00740 428 CDD RRM_SF 293 364 - -
Bma06g00740 428 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 8 425 IPR039539 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00740 K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 - zju:107429041 345.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00853 Bma-Chr4:10771874 Bma06g00740 Bma-Chr6:38402609 4.37E-09 dispersed
Bma06g00740 Bma-Chr6:38402609 Bma08g00243 Bma-Chr8:2994575 4.35E-78 dispersed
Bma06g00740 Bma-Chr6:38402609 Bma12g00963 Bma-Chr12:41607222 8.76E-89 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g31 . Blo16g01084 Bda01g02126 . Bpe13g01372 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0524 . . . . . . . . . . . . Bma06g00740 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018106 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00740 Bma_Chr06 FPKM 0.0 0.0 0.0 0.135537 1.731069 1.640368 1.642661 0.0 0.0 0.0