Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00740 ATGGCATCTGAAATGGTTTATCCATTTCCCCTTCCAGAGAATGTGGGCAGTAATTTTGTGGAGCAGTATTATAACATTCTTCACTACTTCCCCGAGGAGGCTTACAAATTCTATAAGGATTCTAGTGTTCTTACCCGACCTGGTCCAGATGGAAAGATGATGACGGTGACCGCCATGCAAGGAATCAATGACATGATACTCTCTCTGGACTACAAGAACAGTGACTTTGAAATATCGACGATAGATACTCAGCGTTCATTCAATGGCGGGGTGGTTATCATGGTGACTGGTTATTTAACTGGGAAAGACAACCTTAAAAGGATATTTTCCCAAGTGTTCTTTCTAGCCCCACAAGAAACCGGTTTGTTCGTCTTAAATGACATCTTCAACTATTTCGATCAATGTGCTGACGGCAGTGTTGATGCTGGCAATGTTGTCGAAAGTGATCCGGAATCTCCGAAGACACCAGATCCTGTTGAAACCAACGATGGGTTCAAATCTGATCATTCTCCAGAAAATAAAAACCCTCCATTGGTAGAAGTTGCTGAGGGGGGGCAGACCACTGTTCATCTATTGGAAAATAGAAAAGAATCAACTGATGAAATTGGTCTTGTTAGAGAAGATCCGGTCGTGGTTAAGACTGAGGAGATTCCTGCTGCCACAGAGACAACTGCTCCGACCATTTTGGAGGATGCTCCGAAAAAATCTTTTGCAACTTTGGTCAATGCTCTGAATGGTAATGCTACTCCATTTCAGAGGGTTTCACCTGCTAAGCCTGCAGGAAAGCCACAGATTCCTTCAGCACCCAAATTATCGTCTCAGAAAATCGGGGCTGTTGTCAACAAGACTAATATGCCCGCAGTCAATACTCATGCTATCTTTGTTCCAAACTTGCCCATGAGTGCTACTGTTGAAGAACTTGAAAAGCTATTTATGAAGTTTGGTTCCATCAAGCCTAATGGCACTCAAGTTAGGAGTAAGCAGTATCAGGGATCCTGCTTTGGGTTTGTGGAGTTTGAATCAGCAACATCAATGCAAAATGCGCTCAAGGCTTCCCCTATCTTGTTTGGCAACCGAAAACTTTTCATCGAAGAAAGACGAGCGGAAAGTAAAGACGGAGGGAGATATTCATCCGCCAATGGTGGCTACAGAAACAATAACTATTGGCCTCGGGGGAATTTTAGCGAGAGGAACAGCAATGGACAGCGTCAGGGTCGAGAGTTTGTCGGTCGATCGCGAGGAAATATTGTACAAAACGGAGAAGCTAATACTCGGAGGTTTCAATGA 1287 43.9 MASEMVYPFPLPENVGSNFVEQYYNILHYFPEEAYKFYKDSSVLTRPGPDGKMMTVTAMQGINDMILSLDYKNSDFEISTIDTQRSFNGGVVIMVTGYLTGKDNLKRIFSQVFFLAPQETGLFVLNDIFNYFDQCADGSVDAGNVVESDPESPKTPDPVETNDGFKSDHSPENKNPPLVEVAEGGQTTVHLLENRKESTDEIGLVREDPVVVKTEEIPAATETTAPTILEDAPKKSFATLVNALNGNATPFQRVSPAKPAGKPQIPSAPKLSSQKIGAVVNKTNMPAVNTHAIFVPNLPMSATVEELEKLFMKFGSIKPNGTQVRSKQYQGSCFGFVEFESATSMQNALKASPILFGNRKLFIEERRAESKDGGRYSSANGGYRNNNYWPRGNFSERNSNGQRQGREFVGRSRGNIVQNGEANTRRFQ 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 38402609 38404919 - Bma023726.1 Bma06g00740 84242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00740 428 SUPERFAMILY RNA-binding domain, RBD 287 393 IPR035979 GO:0003676
Bma06g00740 428 MobiDBLite consensus disorder prediction 387 406 - -
Bma06g00740 428 MobiDBLite consensus disorder prediction 142 179 - -
Bma06g00740 428 MobiDBLite consensus disorder prediction 387 428 - -
Bma06g00740 428 MobiDBLite consensus disorder prediction 153 170 - -
Bma06g00740 428 SUPERFAMILY NTF2-like 13 131 IPR032710 -
Bma06g00740 428 Gene3D - 272 418 IPR012677 -
Bma06g00740 428 Gene3D - 4 136 - -
Bma06g00740 428 PANTHER BNAA02G14660D PROTEIN 8 425 - -
Bma06g00740 428 MobiDBLite consensus disorder prediction 251 270 - -
Bma06g00740 428 ProSiteProfiles Nuclear transport factor 2 domain profile. 15 131 IPR018222 -
Bma06g00740 428 SMART rrm1_1 292 364 IPR000504 GO:0003723
Bma06g00740 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 359 IPR000504 GO:0003723
Bma06g00740 428 Pfam Nuclear transport factor 2 (NTF2) domain 15 131 IPR002075 -
Bma06g00740 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 368 IPR000504 GO:0003723
Bma06g00740 428 CDD NTF2 12 131 IPR018222 -
Bma06g00740 428 CDD RRM_SF 293 364 - -
Bma06g00740 428 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 8 425 IPR039539 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00853 Bma-Chr4:10771874 Bma06g00740 Bma-Chr6:38402609 4.37E-09 dispersed
Bma06g00740 Bma-Chr6:38402609 Bma08g00243 Bma-Chr8:2994575 4.35E-78 dispersed
Bma06g00740 Bma-Chr6:38402609 Bma12g00963 Bma-Chr12:41607222 8.76E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00740 K24983 - zju:107429041 345.51