Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00742 ATGGGGAGAGGTAGGGTTCAGCTGAAAAGAATAGAAAATAAAATCAATCGGCAAGTTACTTTTTCAAAAAGGAAAGCTGGGTTGTTGAAGAAAGCTCATGAAATCTCTGTACTTTGCGACGCTGAGGTTGCTTTGATCGTCTTCTCTAACAAAGGAAAGCTGTTTGAATACGCTACAGATTCTAGTATGGAGATGATACTGGAACGATATGAGAGATATTCCTGCGCAGAGAGGCAGCTATATGCAACTCAATCTGAGTCACAGGGGAACTGGGTCATTGAGTATTCAAGGCTAAAAGCTAAGATTGAGCTTTTAGAGAGAAAATACAGGCACTATCTGGGTGAAGATCTTAACTCGTTGAGTCTGAAAGAGCTTCAGAGTTTAGAGCAACAGCTTGAGACTGCTCTTAAACACATTCGATCAAAAAAAGTAGGGTTAAATACTAACATTGCTGTAAGTGATTAA 465 39.57 MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSNKGKLFEYATDSSMEMILERYERYSCAERQLYATQSESQGNWVIEYSRLKAKIELLERKYRHYLGEDLNSLSLKELQSLEQQLETALKHIRSKKVGLNTNIAVSD 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 38543749 38547162 - Bma023731.1 Bma06g00742 84244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00742 154 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Bma06g00742 154 Coils Coil 122 142 - -
Bma06g00742 154 Pfam K-box region 84 144 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma06g00742 154 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bma06g00742 154 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma06g00742 154 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma06g00742 154 Coils Coil 95 115 - -
Bma06g00742 154 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Bma06g00742 154 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 143 - -
Bma06g00742 154 ProSiteProfiles K-box domain profile. 88 154 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma06g00742 154 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Bma06g00742 154 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bma06g00742 154 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bma06g00742 154 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bma06g00742 154 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bma06g00742 154 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 143 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma06g00742 Bma14g01715 CCT
Bma06g00742 Bma14g01715 ECH
Bma01g00131 Bma06g00742 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00861 Bma-Chr3:8310992 Bma06g00742 Bma-Chr6:38543749 1.96E-58 dispersed
Bma03g00867 Bma-Chr3:8410947 Bma06g00742 Bma-Chr6:38543749 4.12E-57 dispersed
Bma06g00742 Bma-Chr6:38543749 Bma14g01676 Bma-Chr14:35661221 4.58E-76 dispersed
Bma02g00316 Bma-Chr2:3822326 Bma06g00742 Bma-Chr6:38543749 2.28E-27 transposed
Bma01g00131 Bma-Chr1:1275757 Bma06g00742 Bma-Chr6:38543749 1.61E-98 wgd
Bma14g01715 Bma-Chr14:36348830 Bma06g00742 Bma-Chr6:38543749 1.32E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57472 PF01486 K-box 3.50E-21 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00742 K09264 - qsu:112022353 226.483