Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00744 ATGAACTCAGAGGAGAAGGCTACAATGGAGATCGTTCCACCTTCTGAACATCTCTGCTATGTCCGATGCAACTTCTGCAACACTATTCTTGCGGTTGGGATTCCATGCAAACGTTTGCTGGATACAGTGACAGTGAAGTGCGGCCATTGCAGCAACCTTTCTTTTCTGAGCACTAGACCTCCATTACAAGGCCAATGCCTTGATCATCCATTGTCTCTTCAGACGCAAGTATTTTGCAAAGGCCAGCCTTCATCATCGCCCTCTTCCTCGTCTAGTGAGCCATTATCACCCAAAGCTCCATTTGTGGTCAAACCTCCTGAGAAGAAGCACAGAATTCCATCTGCATACAATCGTTTCATGAAAGAGGAAATACAGCGTCTAAAGGCAGCCAACCCTGAAATACCTCACCGAGAAGCATTCAGCAAAGCAGCAAAAAGTTGGGCGAGGTACATTCCAAACGCACCAGGAGGATCAAGCTCTGCTGGAATGAGCAACAATGAGTGA 504 47.02 MNSEEKATMEIVPPSEHLCYVRCNFCNTILAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPLQGQCLDHPLSLQTQVFCKGQPSSSPSSSSSEPLSPKAPFVVKPPEKKHRIPSAYNRFMKEEIQRLKAANPEIPHREAFSKAAKSWARYIPNAPGGSSSAGMSNNE 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 38621157 38623961 - Bma023734.2 Bma06g00744 84246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00744 167 PANTHER PROTEIN CRABS CLAW 7 161 - -
Bma06g00744 167 MobiDBLite consensus disorder prediction 78 109 - -
Bma06g00744 167 MobiDBLite consensus disorder prediction 78 96 - -
Bma06g00744 167 Gene3D High mobility group box domain 91 153 IPR036910 -
Bma06g00744 167 SUPERFAMILY HMG-box 94 148 IPR036910 -
Bma06g00744 167 Pfam YABBY protein 14 150 IPR006780 GO:0007275
Bma06g00744 167 PANTHER PROTEIN YABBY 6-RELATED 7 161 IPR006780 GO:0007275
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00744 K25796 YAB; plant-specific transcription factor YABBY family protein - vvi:100261225 285.419
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma06g00744 Bma14g01716 CCT
Bma06g00744 Bma14g01716 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00744 Bma-Chr6:38621157 Bma12g00169 Bma-Chr12:2310453 3.56E-42 dispersed
Bma06g00744 Bma-Chr6:38621157 Bma14g00033 Bma-Chr14:456429 3.93E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g6 . . . . . . Bma14g01716 . Cmo04g01798 Cmo18g01118 . Cma18g01096 . Car18g01011 Sed07g2036 Cpe09g00230 . Bhi07g01468 Tan04g0973 Cmetu10g0107 Lac13g0388 Hepe10g1807 . . Cla05g02384 Cam05g2556 Cec05g2588 Cco05g2629 Clacu05g2557 Cmu05g2414 Cre05g2531 Cone13ag0894 . . Cone9ag0527 Lsi04g00353 Csa05g02523 Chy10g01067 Cme10g00347 . . . . . . . Bma06g00744 . . . Cma04g01711 . Car04g01745 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma06g00744 CCT,ECH 1 162 C2C2-YABBY Transcription Factor Family AT1G69180 56.7 5.5e-45 177.6
Bma14g00033 . 62 212 C2C2-YABBY Transcription Factor Family AT2G45190 56.8 2.9e-40 161.8
Bma07g00218 . 1 185 C2C2-YABBY Transcription Factor Family AT1G08465 62.7 7.6e-58 220.3
Bma11g00256 . 1 183 C2C2-YABBY Transcription Factor Family AT1G08465 57.8 1.2e-55 213.0
Bma14g00033 . 19 189 C2C2-YABBY Transcription Factor Family AT1G08465 56.3 9.0e-43 170.2
Bma12g00169 . 19 189 C2C2-YABBY Transcription Factor Family AT1G08465 54.4 3.8e-41 164.9
Bma01g00320 . 5 176 C2C2-YABBY Transcription Factor Family AT1G08465 52.0 2.5e-40 162.2
Bma11g00817 . 11 172 C2C2-YABBY Transcription Factor Family AT1G08465 54.2 4.2e-40 161.4
Bma14g00033 . 29 211 C2C2-YABBY Transcription Factor Family AT4G00180 52.4 1.2e-46 183.3
Bma12g00169 . 29 194 C2C2-YABBY Transcription Factor Family AT4G00180 50.5 5.2e-39 157.9
Bma01g00320 . 7 170 C2C2-YABBY Transcription Factor Family AT2G26580 74.4 9.7e-65 243.0
Bma11g00817 . 7 173 C2C2-YABBY Transcription Factor Family AT2G26580 66.5 4.4e-57 217.6
Bma06g00968 . 7 170 C2C2-YABBY Transcription Factor Family AT2G26580 66.5 2.7e-54 208.4
Bma11g00256 . 1 164 C2C2-YABBY Transcription Factor Family AT2G26580 59.1 8.3e-48 186.8
Bma07g00218 . 6 166 C2C2-YABBY Transcription Factor Family AT2G26580 59.3 6.6e-45 177.2
Bma14g00033 . 19 177 C2C2-YABBY Transcription Factor Family AT2G26580 55.3 4.4e-41 164.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004928 1 2 1 1 1 2 1 2 2 0 1 2 2 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57473 PF04690 YABBY 6.80E-47 CL0114 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00744 Bma_Chr06 FPKM 4.447215 6.432035 10.139081 11.031631 4.273605 3.897437 4.112868 11.97919 11.99541 15.241817