Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00752 ATGGCGGATGCCCGCCGATTGTTCGATCATTTTCCTTATCCAGGTGTTTCTCTGTGGAATGCAATGTTCAGGGGCTACCTCGAGAACGAGATTTTCAAGGATGTAGTCGTTTTGTTTGGAAAAATGAAGAACATTGACGTAGCGCCGAACTGCTTCACATTTCCCATCGTTCTCAAATCTTGTGGAAAAATCAGGGCATTAATCGAAGGTGAGGAAGTCCATTGTCTAGTTCTCAAGAGTGGTTTTAGATCAAACCAGTTTATAGCTACTACTTTGATAGATATGTATGCGATTGGTGGAATGATTAAATCAGCTTATAAGGTGTTCACTGAGATGGTTGATAGAAATGTTTTTGCCTGGACTTCAATGATTAATGGCTACATATTCTGTTCTGACATGGTTTCTGCTCGTCGTCTTTTTGATTTGGCGCCTGAACGAGACATTGTTCTGTGGAATACGATGATTTCAGGATACATAGAAAGAAAGAACATGGCAGAAGCATGTAAGCTGTTCGATGAAATGCCGAGCAGAGATGTAATGTGTTGGAACACGTTGTTGAATGGCTATGGAAATAATGGCAAAATCGACGCTTGCGAGAGACTGTTCGAGGAGATGCCGGAGAGAAATATTTTCTCGTGGAATGGAATGATAGGAGGGTATGTGCATAACGGACGATATTTTGACGTATTGGATTGCTTTCAACGAATGTTACTAGAGGGTAATGTGATGCCTAATCATGCCACTTTAGTTGCAGTGTTGTCCGCCTGTGCGAGATTAGGAGCGCTCGATTTGGGCAAATGGGTCCACGTATATGCAAATAATGCCGGGTTTAATGGAAATGTTTTTGTCGGAAACGCGCTTATCGACATGTATGCAAAATGTGGGACGGTAGACAATTCAGTTGTTGTGTTCAAGAACATGAAAACCAAAGATTTAATCACTTGGAACTCTCTTATTTGTGGCTTGGCGATGCATGGACGTGGAGCTGATGCATTATCTGTATTTAACGAGATGAAGATCGAAGGAGAAAAGCCTGACGGGATCACCTTCGTCGGTATTTTGTGCGCTTGTACACATCTCGGATTAGTGGAAGACGGAATTTCATATTTTCAGTCTATGATTGATGAGTACTCAATTGTGCCTCAAATTGAGCACCACGGGTGTATAGTTGATTTGTTGGGCAAAGCCGGACTCTTAGCTAAGGCGATCGAATTTGTTAGAAACATGCCTATCGAAGCCGACGCTGTTATTTGGGCCTCCATTCTCAGCGCCAGCCGAATTTACAAAAACATCGAAGTGGCCGAACTAGCAATTCAACATCTCGTTCAGTTCGAACCTAAAAACCCGGCAAACTATGTCGTGCTTTCGAATGTTTACGGGCATCTAGGGAGATGGAAAGATGTCGCGCGATTCAAAGTCGCGATGCGAGATACTGGAGTCAAAAAAGTACCCGGTTGTAGTTTGATCGAGATTGATAACGATGTGGTCGAGTTCTATTCCTCGGACGAAAGGCTTTGCGAAAACGAGGAGATTTATGAAGCCTTAAAGGGGTTGACAAAGTTGTTAAGATCTTTGGGTTATGTACCGGATCTTGTCGAGTTATATAGCCTGGATCATAGAGAAGATTATGCTGGATGA 1638 42.8 MADARRLFDHFPYPGVSLWNAMFRGYLENEIFKDVVVLFGKMKNIDVAPNCFTFPIVLKSCGKIRALIEGEEVHCLVLKSGFRSNQFIATTLIDMYAIGGMIKSAYKVFTEMVDRNVFAWTSMINGYIFCSDMVSARRLFDLAPERDIVLWNTMISGYIERKNMAEACKLFDEMPSRDVMCWNTLLNGYGNNGKIDACERLFEEMPERNIFSWNGMIGGYVHNGRYFDVLDCFQRMLLEGNVMPNHATLVAVLSACARLGALDLGKWVHVYANNAGFNGNVFVGNALIDMYAKCGTVDNSVVVFKNMKTKDLITWNSLICGLAMHGRGADALSVFNEMKIEGEKPDGITFVGILCACTHLGLVEDGISYFQSMIDEYSIVPQIEHHGCIVDLLGKAGLLAKAIEFVRNMPIEADAVIWASILSASRIYKNIEVAELAIQHLVQFEPKNPANYVVLSNVYGHLGRWKDVARFKVAMRDTGVKKVPGCSLIEIDNDVVEFYSSDERLCENEEIYEALKGLTKLLRSLGYVPDLVELYSLDHREDYAG 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 39010068 39011705 - Bma023741.1 Bma06g00752 84254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00752 545 Pfam PPR repeat 119 145 IPR002885 -
Bma06g00752 545 Pfam PPR repeat 90 117 IPR002885 -
Bma06g00752 545 Pfam PPR repeat 211 240 IPR002885 -
Bma06g00752 545 Pfam PPR repeat 181 210 IPR002885 -
Bma06g00752 545 Pfam E motif 428 490 IPR046848 -
Bma06g00752 545 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 15 174 - -
Bma06g00752 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 177 IPR002885 -
Bma06g00752 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 85 119 IPR002885 -
Bma06g00752 545 Gene3D Tetratricopeptide repeat domain 100 177 IPR011990 GO:0005515
Bma06g00752 545 Gene3D Tetratricopeptide repeat domain 1 99 IPR011990 GO:0005515
Bma06g00752 545 TIGRFAM PPR: pentatricopeptide repeat domain 149 178 IPR002885 -
Bma06g00752 545 TIGRFAM PPR: pentatricopeptide repeat domain 211 242 IPR002885 -
Bma06g00752 545 TIGRFAM PPR: pentatricopeptide repeat domain 90 117 IPR002885 -
Bma06g00752 545 TIGRFAM PPR: pentatricopeptide repeat domain 313 346 IPR002885 -
Bma06g00752 545 TIGRFAM PPR: pentatricopeptide repeat domain 181 210 IPR002885 -
Bma06g00752 545 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 207 528 - -
Bma06g00752 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Bma06g00752 545 Gene3D Tetratricopeptide repeat domain 178 278 IPR011990 GO:0005515
Bma06g00752 545 Gene3D Tetratricopeptide repeat domain 328 516 IPR011990 GO:0005515
Bma06g00752 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 15 49 IPR002885 -
Bma06g00752 545 Pfam PPR repeat family 14 62 IPR002885 -
Bma06g00752 545 Pfam PPR repeat family 310 357 IPR002885 -
Bma06g00752 545 Pfam PPR repeat family 147 179 IPR002885 -
Bma06g00752 545 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 207 528 - -
Bma06g00752 545 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 15 174 - -
Bma06g00752 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00752 - - - qsu:112004136 810.831
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00752 Bma-Chr6:39010068 Bma11g00471 Bma-Chr11:5726886 2.59E-38 dispersed
Bma06g00752 Bma-Chr6:39010068 Bma14g01456 Bma-Chr14:28064868 3.18E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g318 . . . Bda11g01155 Bpe13g01353 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01155 . . . Bma06g00752 . . Cmo15g00949 . Cma15g00911 . Car15g00855 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013696 1 1 0 1 1 1 1 1 0 1 1 1 1 2 0 1 0 0 0 1 1 1 1 0 1 1 1 1 1 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00752 Bma_Chr06 FPKM 4.43129 5.519127 29.357775 31.716572 10.481178 9.525501 9.032242 137.365189 139.445908 143.987183