Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00766 GGATTTACGAAATCGCTCTTCATGACCGTGCTTTCCGAGATTGGCGACAAGACCTTCTTCGCCGCTGCGATTATGGCAATGCGTCACCCAAGAAGATTTGTCCTGTCTGGCTGCCTGTCTGCTCTTATTGTGATGACCATTCTTTCCGCGCTTATGGGTTGGGCTGCTCCGAATTTGATCTCACGTAAATGGACTCATCACATAACAACCCTTTTATTCTTTGGATTTGGTCTATGGTCTTTGTGGGATGCATTTACTAGTGATGGGGAATCTGAAGAATTTGCTGAAGTTGAAGCAAAGCTGGATGCTGATTTGAAGGCGAACAAGAAAACTACGAAAGACAGTAGTAAGGATGGTGATGAGTTGAAAAAGCAGAGTCGACCTTTTCTTTCGTCATTATTCTCCCCCATCTTCCTGAAGGCATTTTCCATCACATTTTTTGGTGAATGGGGTGACAAAAGTCAGCTGGCTACCATAGGCTTAGCAGCAGATGAGAATCCAGTAGGTGTAGTACTAGGTGGAATCATAGGACAAGCAATGTGTACTGTTGCCGCTGTACTTGGGGGAAGGAGCTTGGCATCTCAGATATCTGAGAAAATAGTCGCACTCTCCGGTGGAATTCTTTTCATTGTTTTTGGAATTCAATCCTACCTTTCAGTCATCGATTAA 669 44.25 GFTKSLFMTVLSEIGDKTFFAAAIMAMRHPRRFVLSGCLSALIVMTILSALMGWAAPNLISRKWTHHITTLLFFGFGLWSLWDAFTSDGESEEFAEVEAKLDADLKANKKTTKDSSKDGDELKKQSRPFLSSLFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPVGVVLGGIIGQAMCTVAAVLGGRSLASQISEKIVALSGGILFIVFGIQSYLSVID 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 39442905 39447436 + Bma023763.1 Bma06g00766 84268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00766 222 PANTHER GDT1 FAMILY PROTEIN 1 220 - -
Bma06g00766 222 Pfam Uncharacterized protein family UPF0016 140 213 IPR001727 -
Bma06g00766 222 Pfam Uncharacterized protein family UPF0016 4 77 IPR001727 -
Bma06g00766 222 PANTHER TRANSMEMBRANE PROTEIN HTP-1 RELATED 1 220 IPR001727 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00766 K23541 TMEM165, GDT1; Ca2+/H+ antiporter, TMEM165/GDT1 family - qsu:112008858 359.762
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00766 Bma-Chr6:39442905 Bma13g00324 Bma-Chr13:5819719 8.10E-53 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g276 . Blo16g01056 . Bda11g01139 Bpe13g01336 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0461 Cone9ag0473 . . . . . . . Bda11g01139 . . . Bma06g00766 . . . . . . Car15g00851 Cpe13g00410 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006913 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00766 Bma_Chr06 FPKM 19.874647 19.92024 13.369809 13.92329 17.901161 17.010715 19.121407 14.940644 14.122162 15.243258