Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00767 ATGGCGGAGAAGCAATTAATCCTGGTCGTTGAAGGCACCGCAGCAATGGGCCCTTTCTGGCATTCCATTGTTACCGATTACCTTGAGAAGATCATAAGGTCATGTTTTCATGGAAATGAACTGCCTGGACAGAAGCCCCCAATATCAAACATCGAGTTCTCTGTGGTCACTTATCATGCACATGGATCTTATTGTGGTTGTCTAGTGCAACGGAGTGGCTGGACAAGAGACCTAGACACTTTCTTACAATGGCTTTTGGCTCTACCCTTTGTTGGGGGTGGTTTTAGTGAAGCTGCTGTAGCAGAAGGGCTTGCCGAAGCTTTGATGATGTTCTCGATTACACAAAATGGTAACCAAAATCAACAAAAAGCAGATGGGCAAAGACACTGCATTCTTGTTGCTGCCAATAATCCTTATCCCCTGCCTACACCAGTTTATCGACCACCTGTACAAAATTTGGAGCAGAGTGAAAATGTTGAAGCACAAACAGGAAATCTTCAATCTGATGCTGAGGCAGTGGCTAAATCATTTGCTCAGTGCTCCATATCTCTATCAGTCATCAGTCCTAAACAGTATCCAAAGCTTAGAGCTGTTTATAATGCGGCAAAACGTAACCCACGAGCAGCGGAACCAACTGTTGACAATGTTAAAAATCCTCAGTTTCTGATTCTGATCTCAGAGAATTTTGTGGAAGCTCGTAGTGCTTTAACTCATCCTGGAACCACTAATTTGCCCTCAAACCAGGCACCTATTAAAATGGACATTACTTCCGTTACTTCAGTTAGTGGGCCCCTTCCAGCATCCATTCCGACAGTGAATGGATCAATTATGAACAGGCAACCAGCTCCTGTGGTAGTCGTGCCTTCCGCCACCGTGAAAGTTGAGCCAAACACAGTTAATTCTATGGTAACTGGACCTACTGGTCCACACATTCCATCTGTTCCTCGTGCTACTGGTCAGGGCGTCCCAAGCTTGCAGACTTCTTCTCCATCTTCTGCTTCTCAAGAAATGCTCACAAATAATAACGACAACTTGCTGGATTTGAAACCAATAGTGGCAGGGGTTTCTCAACCAATAGTGGCAGGGGTTTCCCAGCCATCACGTCCAGTTGGTCCTGCTCCTGCTAATGTCAGTATTCTGAACAATCTCTCACAAGCCCGCCAAGCTATGAACTCTGCTGCATTAAGTGGAGGAACGTCTATGGGACTTCCATCAATGAGCCAAACGCTAGTGGCAATGCATATGTCTAACATGATCTCAAGTGGAATGGGATCTTCTGTGCCTGCCGCTCAGAATGTATTCTCGTCAGGCCAATCAACCATGACGTCATTGTCTGGTACTCTAACACAAGTTCCACAGAATTCAGCTCTTGGTTCATTCAATTCAGCAACCAATAATATGTCTAATAGCTCAAATGTCGGAATTTCACAATCGATGAGTAACATCCCGAGTGGCGTTAGTATGAGTCAATCTGTTTCTGGGTTGACTCAAGGAAATCTTTCAGGAGCACAAATGGTACAAGGTGGAATTAGTGTGAATCAAAGCATGATGAACAACCTTGGTCAATCTGGTGTTTGTTCAGGAAATGGCACTATGATTCCTACTCCTGGAATGGGTCAATCAGTTCAATCTGCAATGCACTCATTAGTTCAAGGTGGGAACAACAATGGAGGAACTAATATGTCGTTACCACAACAGTCATCTGGTGGTTTGCCGCCAGTCCAATCCAAATATGTCAAAGTTTGGGAGGGAAATTTGTCTGGTCAGAGACAAGGACAGCCTGTTTTCATTACCAGACTAGAAGTAGGTTTCCAGCTTGCAGCAAACTGGCCATTGACAATGCAAATAGTACGGCTGATATCTCAAGATCACATGAATAACAAGCAATATGTTGGAAAGGCCGATTTCTTAGTTTTCCGGGCGATGAATCAACATGGATTTCTTGGCCAACTTCAAGAAAAAAAGCTTTGTGCAGTCATACAGTTACCATCCCAGACATTACTTCTATCTGTATCTGACAAAGCTTGCCGCCTGATCGGAATGCTTTTTCCTGGGGTGAGATTTTTCATTTTTTGA 2076 44.12 MAEKQLILVVEGTAAMGPFWHSIVTDYLEKIIRSCFHGNELPGQKPPISNIEFSVVTYHAHGSYCGCLVQRSGWTRDLDTFLQWLLALPFVGGGFSEAAVAEGLAEALMMFSITQNGNQNQQKADGQRHCILVAANNPYPLPTPVYRPPVQNLEQSENVEAQTGNLQSDAEAVAKSFAQCSISLSVISPKQYPKLRAVYNAAKRNPRAAEPTVDNVKNPQFLILISENFVEARSALTHPGTTNLPSNQAPIKMDITSVTSVSGPLPASIPTVNGSIMNRQPAPVVVVPSATVKVEPNTVNSMVTGPTGPHIPSVPRATGQGVPSLQTSSPSSASQEMLTNNNDNLLDLKPIVAGVSQPIVAGVSQPSRPVGPAPANVSILNNLSQARQAMNSAALSGGTSMGLPSMSQTLVAMHMSNMISSGMGSSVPAAQNVFSSGQSTMTSLSGTLTQVPQNSALGSFNSATNNMSNSSNVGISQSMSNIPSGVSMSQSVSGLTQGNLSGAQMVQGGISVNQSMMNNLGQSGVCSGNGTMIPTPGMGQSVQSAMHSLVQGGNNNGGTNMSLPQQSSGGLPPVQSKYVKVWEGNLSGQRQGQPVFITRLEVGFQLAANWPLTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGVRFFIF 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 39450409 39458553 - Bma023764.1 Bma06g00767 84269

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00767 691 Pfam Mediator complex subunit 25 von Willebrand factor type A 3 227 IPR021419 -
Bma06g00767 691 SUPERFAMILY vWA-like 5 139 IPR036465 -
Bma06g00767 691 PANTHER BNACNNG04590D PROTEIN 3 685 - -
Bma06g00767 691 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 25 3 685 IPR045105 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00767 K15168 MED25; mediator of RNA polymerase II transcription subunit 25 - vvi:100259509 917.146
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g273 . Blo16g01055 . Bda11g01138 Bpe13g01334 . . . . Cmo18g01056 . Cma18g01038 . Car18g00964 . Cpe09g00279 Cpe01g01352 Bhi07g01363 . . Lac13g0465 . . . . . . . . . . . . Cone6ag0462 Cone9ag0474 Lsi04g00283 Csa05g02586 Chy10g01121 Cme10g00285 . . . Bda11g01138 . . . Bma06g00767 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007530 1 2 1 1 2 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00767 Bma_Chr06 FPKM 20.968483 20.367462 26.151957 27.001984 11.43752 12.932432 13.599211 26.899849 29.407106 28.856691