Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00768 ATGAATTATTCGGCGAAAATGCAGGAAATGGCTATGGAGATGGATTTCAAAAAGTATGTGGAGGCGTTAAAAGAAGAACGCCGGAAAATTACTGTTTTCCAGCGCGAGCTGCCGCTCTGTTTAGAGCTTATCACTCAAGCGATTGAGTCTTGTACGCAGCAGTTATCGGGGACGACGACGGAGTGTTTTAATGGAGGACTATCTGATTGCTCCGAGCAAACTTCCGGTGAATGCCCGGTGCTGGAGGAATTTATTCCGGTCAAAAAGGGTTTATCTTCAGAATTTTTGGATGAAGAGAGAGAATCTCTAAAAATGAGAAAGGAGAACAAAAATAGCGAGAAGAAGCAATTGGGTCAATCGGATTGGCTTAAATCAGCTCAGCTATGGAATCCAGATCCTGACTGGTTTTGCTTTTCGCAGGATTTACCGAAGAAGACGACGGTTGTGGAGGTGAAGAAAAATGGCGGAGCTTTCCAGCCATTCCACAGAGAAAAAACCACAGGAAAAACAAACTCGCCCGTCGAAAATGGGCCGGCGGCGACTTTAATTTGTACGGCGGAAACAGCTTTCCAAAGCAGCACCAAACGAGAAGAGAAAGACGAACTGGGTAAAAGAAAGCTCCGGCGGTGCTGGTCGCCGGAGTTGCATCGCCGATTCTTGAGTGCCCTTCAACAGCTCGGCGGCTCACATGTGGCGACGCCAAAGCAGATTAGGGAGCTAATGAAAGTGGATGGTCTAACTAACGATGAAGTTAAAAGCCATTTACAGAAATATCGTTTGCACACTAGAAGGTCAAGTCCTGTACACAACAATGGCGTCAAACAGTCACCGCAGTATGTGGTAGTGGGCGGAATATGGGTGCCGCCGTCGGAATACGCAGTGGCGCCGGCGACAACCGTCGCCGGAGAGGGCAACGAATTCTACGTAGCTCCAACCACAGTTTCACAAGGTGGCCAAGGGTCCGCCATTAAAAGGCCACAGCCAAAGCGATTGGTTCAGTCTAGCACGGAAGGAAGAAGGATCAGCCACGGCGGAGAAGACGGGATAGAAGGCGGTCGTCATTCTAATTCTCCGGCGACGTCGTCTTCCACTTACGCTTCCACAGCTTCCCCTGGGCTTTGA 1122 49.38 MNYSAKMQEMAMEMDFKKYVEALKEERRKITVFQRELPLCLELITQAIESCTQQLSGTTTECFNGGLSDCSEQTSGECPVLEEFIPVKKGLSSEFLDEERESLKMRKENKNSEKKQLGQSDWLKSAQLWNPDPDWFCFSQDLPKKTTVVEVKKNGGAFQPFHREKTTGKTNSPVENGPAATLICTAETAFQSSTKREEKDELGKRKLRRCWSPELHRRFLSALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRSSPVHNNGVKQSPQYVVVGGIWVPPSEYAVAPATTVAGEGNEFYVAPTTVSQGGQGSAIKRPQPKRLVQSSTEGRRISHGGEDGIEGGRHSNSPATSSSTYASTASPGL 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 39463142 39464593 - Bma023765.1 Bma06g00768 84270

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00768 373 Coils Coil 93 113 - -
Bma06g00768 373 MobiDBLite consensus disorder prediction 354 373 - -
Bma06g00768 373 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 15 368 IPR044787 GO:0003700|GO:0006355
Bma06g00768 373 Gene3D - 205 263 - -
Bma06g00768 373 MobiDBLite consensus disorder prediction 312 373 - -
Bma06g00768 373 MobiDBLite consensus disorder prediction 312 339 - -
Bma06g00768 373 PANTHER TRANSCRIPTION FACTOR HHO2 15 368 - -
Bma06g00768 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 263 IPR017930 -
Bma06g00768 373 SUPERFAMILY Homeodomain-like 204 264 IPR009057 -
Bma06g00768 373 Pfam Myb-like DNA-binding domain 208 259 IPR001005 -
Bma06g00768 373 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 206 261 IPR006447 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00768 - - - vvi:100257723 357.066
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma06g00768 Bma14g01699 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00768 Bma-Chr6:39463142 Bma12g00476 Bma-Chr12:13473861 1.20E-37 dispersed
Bma14g01699 Bma-Chr14:36135175 Bma06g00768 Bma-Chr6:39463142 3.52E-116 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g270 Blo01g00489 Blo16g01054 Bda01g02090 . Bpe13g01332 . Bma14g01699 . . Cmo18g01059 . Cma18g01041 . Car18g00967 Sed06g1866 Cpe09g00276 . Bhi07g01367 Tan04g0896 Cmetu10g0277 Lac13g0461 Hepe01g1219 . . Cla05g02327 Cam05g2500 Cec05g2524 Cco05g2566 Clacu05g2494 Cmu05g2357 Cre05g2473 Cone13ag0852 Cone19ag0853 Cone6ag0464 Cone9ag0476 Lsi04g00286 Csa05g02583 Chy10g01118 Cme10g00288 . Blo11g00832 Bda07g01528 . . Bpe02g02281 . Bma06g00768 . . . . . . Car15g00854 Cpe13g00409 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma06g01283 BCT 12 312 G2-like Transcription Factor Family AT3G24120 54.8 1.9e-74 276.2
Bma02g01204 BCT 12 263 G2-like Transcription Factor Family AT3G24120 57.4 6.5e-67 251.1
Bma12g00569 BCT,CCT 20 185 G2-like Transcription Factor Family AT3G24120 58.0 4.7e-41 165.2
Bma12g00572 . 20 185 G2-like Transcription Factor Family AT3G24120 58.0 4.7e-41 165.2
Bma11g00043 . 13 146 G2-like Transcription Factor Family AT3G24120 60.4 5.4e-37 151.8
Bma01g00775 . 1 184 G2-like Transcription Factor Family AT5G42630 54.8 1.4e-37 153.3
Bma06g00768 CCT 1 256 G2-like Transcription Factor Family AT1G25550 52.6 1.3e-58 223.4
Bma14g01699 CCT 19 251 G2-like Transcription Factor Family AT1G25550 56.9 5.0e-53 204.9
Bma14g01699 CCT 19 305 G2-like Transcription Factor Family AT1G68670 51.6 1.2e-64 243.8
Bma14g01699 CCT 19 251 G2-like Transcription Factor Family AT3G25790 54.9 1.5e-43 173.3
Bma06g00768 CCT 19 298 G2-like Transcription Factor Family AT1G13300 51.2 2.0e-59 226.5
Bma14g01699 CCT 19 294 G2-like Transcription Factor Family AT1G13300 50.2 4.9e-58 221.9
Bma07g00088 . 1 269 G2-like Transcription Factor Family AT3G46640 52.4 4.3e-64 241.9
Bma01g02700 . 1 306 G2-like Transcription Factor Family AT5G05090 53.9 9.2e-73 270.4
Bma05g01331 . 1 309 G2-like Transcription Factor Family AT5G05090 51.9 2.5e-70 262.3
Bma14g01215 . 6 147 G2-like Transcription Factor Family AT5G29000 54.4 1.1e-37 154.1
Bma06g01283 BCT 12 312 G2-like Transcription Factor Family AT4G13640 53.5 6.9e-61 231.1
Bma02g01204 BCT 12 310 G2-like Transcription Factor Family AT4G13640 53.2 1.1e-55 213.8
Bma09g00485 BCT 130 376 G2-like Transcription Factor Family AT3G04450 53.0 4.4e-50 195.7
Bma06g01283 BCT 12 312 G2-like Transcription Factor Family AT3G24120 54.8 1.9e-74 276.2
Bma02g01204 BCT 12 263 G2-like Transcription Factor Family AT3G24120 57.4 6.5e-67 251.1
Bma12g00569 BCT,CCT 20 185 G2-like Transcription Factor Family AT3G24120 58.0 4.7e-41 165.2
Bma12g00572 . 20 185 G2-like Transcription Factor Family AT3G24120 58.0 4.7e-41 165.2
Bma11g00043 . 13 146 G2-like Transcription Factor Family AT3G24120 60.4 5.4e-37 151.8
Bma12g00569 BCT,CCT 1 275 G2-like Transcription Factor Family AT1G79430 58.3 3.3e-65 245.7
Bma12g00572 . 1 275 G2-like Transcription Factor Family AT1G79430 57.9 7.3e-65 244.6
Bma08g00825 BCT,CCT 1 189 G2-like Transcription Factor Family AT1G79430 59.1 2.9e-53 206.1
Bma06g01283 BCT 36 200 G2-like Transcription Factor Family AT1G79430 61.4 6.9e-39 158.3
Bma02g01204 BCT 36 202 G2-like Transcription Factor Family AT1G79430 61.5 1.1e-36 151.0
Bma01g02700 . 1 306 G2-like Transcription Factor Family AT3G10760 65.1 2.2e-95 345.9
Bma05g01331 . 1 309 G2-like Transcription Factor Family AT3G10760 64.6 1.9e-91 332.8
Bma01g02700 . 1 208 G2-like Transcription Factor Family AT2G40970 64.0 1.9e-64 242.7
Bma05g01331 . 1 207 G2-like Transcription Factor Family AT2G40970 62.7 1.4e-62 236.5
Bma13g00423 . 91 323 G2-like Transcription Factor Family AT4G28610 51.0 2.0e-50 196.8
Bma14g01215 . 4 225 G2-like Transcription Factor Family AT4G28610 50.4 1.5e-42 170.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004323 2 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57477 PF00249 Myb_DNA-binding 1.50E-06 CL0123 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00768 Bma_Chr06 FPKM 1.912656 2.006305 2.589381 2.61652 5.225697 3.897045 6.070572 0.318218 0.0 0.0