Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00769 GCCATGCAAACGCCTTCGTTTCCCAGCATGTATTCCAGTGGAAGTGGCTGTTTTGAACCAGATGAAGAAGATGAAGAATCCATTTTCCTTTCTCTTTGTCCTCCGGGCCAGCCTATCTCTAAGGACCATTTTCTTAACCACTCTTCTTCTTCTTCGCCTCCTTCCTCGCACCAACCTCTAATTTATCACCAAAACCCTAACTTAGACAACGGTGTTACAGTAGCCTTGCACATTGGACCACCTTCCTGTACAAACCCTAACGAACCCTTTTCTCGTCCTCTCGACGGCCATTACTGGATTCCTTCACCAGCTCAAATCCTCGTCGGCCCTACTCAGTTTTCTTGTACTGTCTGCGACAAAACTTTCAACAGATACAATAACATGCAGATGCATATGTGGGGACATGGATCGCAATACAGGAAAGGTCCGGAATCATTAAAAGGAACAAAAGCAGCTTCTTCTTTGCTTAGATTGCCTTGCTATTGCTGCGCAGAAGGGTGCAAAAACAACATAGAACATCCAAGATCGAAGCCATTAAAGGATTTCAGAACTCTGCAGATCCATTACAAGAGAAAGCATGGGGCGAAGCCATTTGGGTGCAGAAAATGTGGAAAGCCTTTTGCAGTGAGAGGAGATTGGAGGACTCACGAGAAAAACTGTGGAAAGCTCTGGTTTTGCATTTGTGGGTCTGATTTCAAGCACAAAAGGTCTCTGAAAGATCACGTTCGAGCCTTTGGAAATGGCCATGCATCTCATTCTGTTGAACTTTGCCAGGTCGATGAGGAAGAAAATTTGGATTATCAAGAGGAAGAACATGAAAATAGAGATCGTGGGTCTGTGTTTTATTAG 849 44.41 AMQTPSFPSMYSSGSGCFEPDEEDEESIFLSLCPPGQPISKDHFLNHSSSSSPPSSHQPLIYHQNPNLDNGVTVALHIGPPSCTNPNEPFSRPLDGHYWIPSPAQILVGPTQFSCTVCDKTFNRYNNMQMHMWGHGSQYRKGPESLKGTKAASSLLRLPCYCCAEGCKNNIEHPRSKPLKDFRTLQIHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGNGHASHSVELCQVDEEENLDYQEEEHENRDRGSVFY 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 39469829 39470830 + Bma023766.1 Bma06g00769 84271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00769 282 PANTHER ZINC FINGER PROTEIN WIP6 11 275 - -
Bma06g00769 282 SMART c2h2final6 113 135 IPR013087 -
Bma06g00769 282 SMART c2h2final6 198 218 IPR013087 -
Bma06g00769 282 SMART c2h2final6 161 193 IPR013087 -
Bma06g00769 282 Gene3D Classic Zinc Finger 194 264 - -
Bma06g00769 282 Gene3D Classic Zinc Finger 112 135 - -
Bma06g00769 282 PANTHER ZINC FINGER PROTEIN WIP2 11 275 IPR043584 GO:0003700|GO:0010468
Bma06g00769 282 MobiDBLite consensus disorder prediction 1 21 - -
Bma06g00769 282 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
Bma06g00769 282 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 140 IPR013087 -
Bma06g00769 282 MobiDBLite consensus disorder prediction 42 61 - -
Bma06g00769 282 SUPERFAMILY beta-beta-alpha zinc fingers 104 135 IPR036236 -
Bma06g00769 282 Pfam Zinc finger, C2H2 type 113 132 IPR013087 -
Bma06g00769 282 SUPERFAMILY beta-beta-alpha zinc fingers 179 218 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00769 Bma-Chr6:39469829 Bma09g00850 Bma-Chr9:47527530 2.62E-96 dispersed
Bma06g00769 Bma-Chr6:39469829 Bma01g02723 Bma-Chr1:84574183 3.88E-102 transposed
Bma06g00769 Bma-Chr6:39469829 Bma04g00457 Bma-Chr4:3823478 4.88E-102 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57478 PF00096 zf-C2H2 0.004 CL0361 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00769 - - zju:107429479 435.261