Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma06g00780 CTGCAGTTTAACAATGTGGTGTACAGTATTAAGTTACCAATAATGAAGAAGGGTGGCTGTTTAATATCAAATGATCCAAAATTAACTCGAACTATACTCTATGGCGTGAGTGGAATCGTTAGGCCTGGTGAACTTTTAGCAATGTTGGGCACTTCGGGAAGTGGAAAGACGACCCTCTTGACCGCCCTCTCCGGCCGCCACTTGCCAGGGAAGATCTCCGGCGAAATAGTCTACAACGGAAAGCCATTCTCCACCTCAATAAAACGTAACACGGGTTTTGTCACCCAAGACGACGTGCTTTATCCTCATCTCACAGTGCTTGAGACCCTAAAATATGCTGCCATTTTGAAGTTACCAAACGAACTTACAAAATCAGAGAAGGTAGAACAAGCTGAGATGATAATAATGGAATTAGGGCTAACACAATGTCGTGACAGTGTGATCGGTGGAGGCCTGTTACGAGGCATTTCAGGGGGTGAGCGTAAAAGGGTAAGCATAGGGCATGAGATGATTTTAAATCCTAGCCTCTTGCTCCTTGACGAACCCACTTCCGGGCTAGACTCGACAACGGCTCAGCAGATAGTCAAAAGGCTGAGAAGGATGGCTCGAGGTGGTCGGACTGTGGTGACGACAATTCACCAACCGCCGAGCAGGCTGTATAGAATGTTTGACAAGGTGGTGGTGCTGTCGGACGGCTGTGTTATTTATAGTGGACGTGCAGATGAGGTTGTGGACTATTTTGGGTCAATTGGTTATGAGCTAGGTTTCACTCACATGAATCCTGCTGATTTTCTGCTTGACCTAGCGAATGGCATAGCACCCAATGCAAAACAGAGTGATGAGCTTGATTTCAATGGGAGCTTAGAAAATGATGGCCCTCGAAGTTTAATCAAGCAGTCCCTTATATCATCCTACAAGAAGAATCTCTATCCTCGGCTGCAGGCTGAGATGGAATCAGATTGTAACTACTCAGCCATGTCAAAATCAGAAGAATCACCACGTAGAAGTTGTGCGAATCAGTGGAGCACTCGCTGGTTGGAGGAACTTATTGTGTTGCTAAGGAGGGGTCTAAAAGAGAGGAGGCATGAATCTTACTCCAGTTTAAGGATTGTCCAAGTGATGTCAGTTTCTATTCTTTCTGGACTTTTATGGTGGCAATCTACCACTTCTCACTTACAAGATCAGGTTGGACTTCTTTTCTTCTTCTCCATATTCTGGGGTTACTTTCCTCTCTTCAATGCCATATTTGCCTTTCCATTGGAGCAGCAAATGCTGATCAAAGAACGTTCTGCCGGAATGTACCGTCTCTCCTCCTACTTCTTTGCTAGAACTGCCGGAGACTTGCCAATGGAGCTCGTCCTTCCGATCATTTTCACCAGCATTACATATTGGATGGGAGGTCTAAAACCATCACTTCTTACATTTGTACAAACCATCTTCATCATCCTCTTCAATGTGTTAGTTTCACAAGGTTTAGGCCTAGCGCTTGGAGCTATTTTAATGGACGTGAAACAGGCCACAACCCTAGCTTCAGTCACCATGTTGGTGTTTTTACTTGCAGGTGGATATTATATTCAACACATCCCACTTTTCATAGCCTGGTTAAAGTACATTTCCTTCAGCCATTACTGCTACAGGCTTCTTGTTGAAGTTCAATACTCAGCTACCGAGGTTTATGAATGTGGGATTGGAGAATTTTGTAAGATAATGGATTTTCCTGCCATTAAATATCTAGGTCTTGATAATATTTGGTTGGATTTGTGTGCTTTGAGTCTTATGTTGGTGGGCTATAGGGTTGTGGCCTATTTAGCTTTGAAGATGGGACAGCCTCACTGA 1836 44.23 LQFNNVVYSIKLPIMKKGGCLISNDPKLTRTILYGVSGIVRPGELLAMLGTSGSGKTTLLTALSGRHLPGKISGEIVYNGKPFSTSIKRNTGFVTQDDVLYPHLTVLETLKYAAILKLPNELTKSEKVEQAEMIIMELGLTQCRDSVIGGGLLRGISGGERKRVSIGHEMILNPSLLLLDEPTSGLDSTTAQQIVKRLRRMARGGRTVVTTIHQPPSRLYRMFDKVVVLSDGCVIYSGRADEVVDYFGSIGYELGFTHMNPADFLLDLANGIAPNAKQSDELDFNGSLENDGPRSLIKQSLISSYKKNLYPRLQAEMESDCNYSAMSKSEESPRRSCANQWSTRWLEELIVLLRRGLKERRHESYSSLRIVQVMSVSILSGLLWWQSTTSHLQDQVGLLFFFSIFWGYFPLFNAIFAFPLEQQMLIKERSAGMYRLSSYFFARTAGDLPMELVLPIIFTSITYWMGGLKPSLLTFVQTIFIILFNVLVSQGLGLALGAILMDVKQATTLASVTMLVFLLAGGYYIQHIPLFIAWLKYISFSHYCYRLLVEVQYSATEVYECGIGEFCKIMDFPAIKYLGLDNIWLDLCALSLMLVGYRVVAYLALKMGQPH 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40129602 40131818 + Bma023785.1 Bma06g00780 84282

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma06g00780 611 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 1 608 - -
Bma06g00780 611 SMART AAA_5 42 233 IPR003593 -
Bma06g00780 611 Pfam ABC-2 type transporter 213 278 IPR043926 GO:0140359
Bma06g00780 611 Pfam ABC-2 type transporter 348 552 IPR013525 GO:0016020|GO:0140359
Bma06g00780 611 Gene3D - 24 250 IPR027417 -
Bma06g00780 611 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 1 608 - -
Bma06g00780 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 252 IPR027417 -
Bma06g00780 611 Pfam ABC transporter 35 184 IPR003439 GO:0005524
Bma06g00780 611 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 256 IPR003439 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma06g00780 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - pvy:116132157 910.212
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02482 Bma-Chr1:82546988 Bma06g00780 Bma-Chr6:40129602 0 dispersed
Bma04g00353 Bma-Chr4:2852509 Bma06g00780 Bma-Chr6:40129602 0 dispersed
Bma06g00780 Bma-Chr6:40129602 Bma15g00090 Bma-Chr15:1006991 0 dispersed
Bma06g01147 Bma-Chr6:48392700 Bma06g00780 Bma-Chr6:40129602 1.29E-55 dispersed
Bma06g00780 Bma-Chr6:40129602 Bma10g00508 Bma-Chr10:5952397 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g240 . Blo16g01044 . . Bpe13g01320 . . . Cmo04g01619 . . . Car04g01598 . . . Cpe01g01375 . . . . . . . . . . . . . . Cone13ag0868 . Cone6ag0480 . . . . . . . . . . . . Bma06g00780 . . . . Cma15g01421 . . Cpe13g00026 . Bhi12g01423 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001139 3 3 3 3 3 2 2 2 2 2 2 2 4 2 2 4 2 5 4 2 2 2 2 3 3 1 3 3 3 3 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma06g00780 Bma_Chr06 FPKM 1.287938 1.362517 0.655611 0.842719 3.510182 3.220326 2.722776 58.093891 63.39782 61.833385