Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma06g00810 | ATGGACATCTTCACTGCGTTAGAGAATTCTACCATTTATGTTCAAGGATTAGCTCCGTTCGCCATTAATGGATTCCCTGATGAAAACCCTCCCAACGCAGTTAATAATTTTCATCATTTTGATCTTCCAATGTCTTCAGAATCTGCTTCCAGTTTCGCAGGAAATGCAAGGGAAGAAAGCAGAATTCTATCAGCAGGAAGCGCTCCATTCTCCCGAGAAAATACTGGGGGCCTGGGAGGAAGAAAGAGAAGAAGAGAAGATCCACAGAGAGAGAATGAAGGGAAGACAAGAGAAGTAGTCCATGTACGAGCGAAACGAGGACAAGCTACTGATAATCACAGTTTGGCTGAAAGGATAAGACGAGAGAAAATAAATCAGAGGTTGAAATGCTTACAAGACCTAGTTCCAGGGTGTTACAAGACGATGGGAATGGCAGTCATGCTGGATGTTATAATAGGTTATATCCAATCTCTGCAGAATCAGATCGAGTTTCTTTCATTGAAGCTTTCTGCTGCAAGTAGGTACTACGATTTCAACAGCTCCTCAGATGTTGATCCCTCGCAGACCCTCCAAGAGAGTAACATGGAATGTCCAAGTTTACAGGGGACAAATGGGTATGAAATGCAAGAGTTGGAGAGGGTAGCTGCAGGAGAAGGGTATGGTGGGCTCTCTTCCGTACACTCAACTTTGCCTTTTTAA | 699 | 43.63 | MDIFTALENSTIYVQGLAPFAINGFPDENPPNAVNNFHHFDLPMSSESASSFAGNAREESRILSAGSAPFSRENTGGLGGRKRRREDPQRENEGKTREVVHVRAKRGQATDNHSLAERIRREKINQRLKCLQDLVPGCYKTMGMAVMLDVIIGYIQSLQNQIEFLSLKLSAASRYYDFNSSSDVDPSQTLQESNMECPSLQGTNGYEMQELERVAAGEGYGGLSSVHSTLPF | 232 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 41583850 | 41585276 | + | Bma023838.1 | Bma06g00810 | 84312 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma06g00810 | 232 | Gene3D | - | 105 | 176 | IPR036638 | GO:0046983 | |
| Bma06g00810 | 232 | CDD | bHLH_AtBPE_like | 98 | 183 | - | - | |
| Bma06g00810 | 232 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 108 | 158 | IPR011598 | GO:0046983 | |
| Bma06g00810 | 232 | MobiDBLite | consensus disorder prediction | 63 | 98 | - | - | |
| Bma06g00810 | 232 | MobiDBLite | consensus disorder prediction | 77 | 98 | - | - | |
| Bma06g00810 | 232 | Pfam | Helix-loop-helix DNA-binding domain | 112 | 159 | IPR011598 | GO:0046983 | |
| Bma06g00810 | 232 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 59 | 196 | IPR024097 | GO:0006355 | |
| Bma06g00810 | 232 | PANTHER | TRANSCRIPTION FACTOR BHLH75 | 59 | 196 | - | - | |
| Bma06g00810 | 232 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 106 | 176 | IPR036638 | GO:0046983 | |
| Bma06g00810 | 232 | SMART | finulus | 114 | 164 | IPR011598 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma03g00894 | Bma-Chr3:8758240 | Bma06g00810 | Bma-Chr6:41583850 | 3.41E-33 | dispersed | |
| Bma06g00810 | Bma-Chr6:41583850 | Bma05g00457 | Bma-Chr5:15581208 | 1.74E-32 | dispersed | |
| Bma06g00810 | Bma-Chr6:41583850 | Bma06g01401 | Bma-Chr6:50785189 | 9.13E-33 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 57481 | PF00010 | HLH | 6.10E-06 | No_clan | Bma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma06g00810 | - | - | vvi:100264677 | 200.675 |